Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1655 136 4e-27
seq3230 113 4e-20
seq2882 96.9 3e-15
>seq1655
Length=66175
Score = 136 bits (150), Expect = 4e-27
Identities = 300/447 (67%), Gaps = 17/447 (4%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
||| | ||||| || ||| | |||||||| |||||||||| || || ||| | ||
Sbjct 51731 CGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATC 51790
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | |||| | || | |||||||||||||| || ||||||||| |||||
Sbjct 51791 TTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 51850
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAAC----ACTAGAGT 47311
| ||||| ||| |||||||| |||| ||||| || | || | || || | |
Sbjct 51851 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACAAG 51910
Query 47312 CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371
| |||||| || || | | ||||| | |||| ||||| | ||| ||
Sbjct 51911 CCATCAAACCA-GGTTGT--------TGAA-GACATCATCACCGAGGCCGTTGTCATCGA 51960
Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431
| ||||||| || | || || || || | | | ||||||||||| || | ||
Sbjct 51961 GCAGGAGTTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCAT 52020
Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGAT 47491
| | |||||||||| || ||||||||||| || ||| | || | | |||
Sbjct 52021 GTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCA 52080
Query 47492 TTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAA 47551
||| || || || || ||||| |||||| | ||||| || |||| ||||| |||||
Sbjct 52081 CTACAACGCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAA 52140
Query 47552 CTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||| ||||||||||| |||||||| ||
Sbjct 52141 CTTCTTCGAGAAGCGTGTCGGCGACTA 52167
>seq3230
Length=199858
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| ||| | ||||||| || || || || || ||
Sbjct 170525 GTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCG 170466
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||||||||| || || || || ||||||||||||||| ||| ||| |||
Sbjct 170465 GCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTA 170406
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||||| ||| || || | ||| | ||| |||||||| || ||
Sbjct 170405 ACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTC 170346
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 170345 TTGACGAAGATCTGCAT 170329
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| || || || ||||| ||||
Sbjct 170327 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 170268
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||| ||| |||| | |||||||| || |||||
Sbjct 170267 AGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 170208
Query 127007 ATGCCCTCCTTGTC 127020
||||||||||||||
Sbjct 170207 ATGCCCTCCTTGTC 170194
>seq2882
Length=147932
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
||||| || ||||| |||| || || || ||| || || || ||||| ||| |||||
Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
|||||||| || || || || || |||||||| ||| ||| || ||||| |||| ||
Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTG-TC 6706
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | ||| || |||| ||| | || ||||| || || || || || ||
Sbjct 6707 GATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766
Query 127105 AATCTGCATGGCTT 127118
| | | |||| |||
Sbjct 6767 ACTGT-CATGACTT 6779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475478968569520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |