Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1655 136 4e-27 seq3230 113 4e-20 seq2882 96.9 3e-15 >seq1655 Length=66175 Score = 136 bits (150), Expect = 4e-27 Identities = 300/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| | ||||| || ||| | |||||||| |||||||||| || || ||| | || Sbjct 51731 CGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATC 51790 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | |||| | || | |||||||||||||| || ||||||||| ||||| Sbjct 51791 TTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 51850 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAAC----ACTAGAGT 47311 | ||||| ||| |||||||| |||| ||||| || | || | || || | | Sbjct 51851 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACAAG 51910 Query 47312 CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371 | |||||| || || | | ||||| | |||| ||||| | ||| || Sbjct 51911 CCATCAAACCA-GGTTGT--------TGAA-GACATCATCACCGAGGCCGTTGTCATCGA 51960 Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431 | ||||||| || | || || || || | | | ||||||||||| || | || Sbjct 51961 GCAGGAGTTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCAT 52020 Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGAT 47491 | | |||||||||| || ||||||||||| || ||| | || | | ||| Sbjct 52021 GTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCA 52080 Query 47492 TTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAA 47551 ||| || || || || ||||| |||||| | ||||| || |||| ||||| ||||| Sbjct 52081 CTACAACGCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAA 52140 Query 47552 CTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||| ||||||||||| |||||||| || Sbjct 52141 CTTCTTCGAGAAGCGTGTCGGCGACTA 52167 >seq3230 Length=199858 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | ||||||| || || || || || || Sbjct 170525 GTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCG 170466 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || ||||||||||||||| ||| ||| ||| Sbjct 170465 GCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTA 170406 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| ||| || || | ||| | ||| |||||||| || || Sbjct 170405 ACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTC 170346 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 170345 TTGACGAAGATCTGCAT 170329 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| |||| Sbjct 170327 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 170268 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||| | |||||||| || ||||| Sbjct 170267 AGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 170208 Query 127007 ATGCCCTCCTTGTC 127020 |||||||||||||| Sbjct 170207 ATGCCCTCCTTGTC 170194 >seq2882 Length=147932 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| |||| || || || ||| || || || ||||| ||| ||||| Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| || || || || || |||||||| ||| ||| || ||||| |||| || Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTG-TC 6706 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || |||| ||| | || ||||| || || || || || || Sbjct 6707 GATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766 Query 127105 AATCTGCATGGCTT 127118 | | | |||| ||| Sbjct 6767 ACTGT-CATGACTT 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478968569520