Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1655 197 2e-45 seq1589 118 1e-21 >seq1655 Length=66175 Score = 197 bits (218), Expect = 2e-45 Identities = 546/821 (67%), Gaps = 31/821 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| || || || ||||| ||| |||||||| Sbjct 52168 GTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTCTCCAT 52109 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAAT--CTGTTTGAGGAG 127347 ||| || || ||||| | | ||| | | ||| || | | | | |||||| Sbjct 52108 AAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAG---GAGGAG 52052 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 ||| || | |||| |||| ||||||| |||| || | |||||| |||| ||| Sbjct 52051 ACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGC 51992 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 ||||||||| ||||| || ||| ||| ||| ||| | || || || | |||| | Sbjct 51991 ACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGATGATGTC 51932 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTC----TTGAAGAGTTCCA--CAG- 127520 | || || || | | || || | || | | ||| || ||| Sbjct 51931 TTCAA-------CAACCTGGTTTGATGGCTTGTTGTTGAGGTGGGAGAACAGCAGGCAGG 51879 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| | |||||||||||||||||||| || || |||||| || || | Sbjct 51878 CGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGG 51819 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||||||||| ||||||||||||||||| || | ||||| || ||||||||||| | Sbjct 51818 GCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATGC 51759 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AAC 127699 |||| | || || || | ||||| |||||||| || | |||| | | | Sbjct 51758 CCTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGG-TCGAGTTCTTGTCGGAGATC 51700 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 || || |||||| | ||||| || ||| ||||||| | | | ||| || | ||| Sbjct 51699 CATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAG 51640 Query 127760 A-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818 | || | | | || || || || ||||||| |||| ||||| || ||||| || Sbjct 51639 AGGTACGTGCGTTGCT-TGGGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATGTCTC 51581 Query 127819 GCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 | ||||| | | ||| ||| || || ||||||| |||| || ||| |||| Sbjct 51580 GGAGTGGATGTTCTCCATCATGATTTGGAAAC-CGTAGAAGCAGCGGGCCTCGGGGATCT 51522 Query 127878 GTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 | ||||| || | || | | | ||| |||||| || ||||||||||| |||| Sbjct 51521 GCACCTC-TCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCATCGGAGGCAGCG 51463 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAG 127993 || || ||||||| | ||||| | || | ||||| ||| | |||||| Sbjct 51462 AAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTGAGGCGCTTGTTCCAG 51403 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| |||||||| || ||||| | |||||| || ||||| Sbjct 51402 TCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCA 51362 >seq1589 Length=144912 Score = 118 bits (130), Expect = 1e-21 Identities = 468/720 (65%), Gaps = 20/720 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||||||| |||||||| ||| ||||| ||| || | ||||| Sbjct 47988 TAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGAAACCCATGATCTGCGAGGTGGAT 47929 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| || | ||| || |||||| | ||| | | || || Sbjct 47928 GCAGTCGGCATGGGAGCGACGAGGAGCGAGTTGCGAACACCGTGCTCGGCGATCTTGGCC 47869 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC--TCCCCCTCCCACATATCAAACTGGA 116080 ||||| ||| ||||||| || || | || || | | ||||||| || |||| | Sbjct 47868 TTGAGTGCGGCCCAGTCCCAGA-GATCAGTGGGAGTCACAC-CCCACATGTCGTACTGAA 47811 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT---CCG 116137 | || | ||| | || || ||||| ||||||| ||||| || || || | | Sbjct 47810 GCTCGCCCTTGGAAACGGGAGAGCCCTCGTATGTCTCGTATGGTCC---AAGCTTAGCAG 47754 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | ||| | || ||| || |||||||| || ||||| || || || || | Sbjct 47753 CGAGATCGCATGAAGCGGTGAGAGCAGCGTGATAGATGGTCTCGAAGATCTGAATGTTGA 47694 Query 116198 T-TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA--AATAAATACATCCGCGA 116254 || | | |||| || || || | | || || | || ||| |||| || | Sbjct 47693 GCTGGCGAG-CCTCAGGAGAGTCGAAAGGCATGCG-CAGAGCCAAGAAAG-CATCGGCAA 47637 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-C 116313 |||| | ||||||||| || || || || || | | || ||| ||||| ||| | Sbjct 47636 GACCGTTGACACCGAGACCGATGGGACGGTGACGGAAGTTGCTCTTGCGAGCC-TCTGGC 47578 Query 116314 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 116373 || || || || ||||| | | | || | || |||||||| | |||| Sbjct 47577 ACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTTTGAGTGACC 47518 Query 116374 TCATGAAGCTTTTCGTAATCAAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGC 116432 | || ||||| || | || |||| || || ||| | ||| || | || ||||| Sbjct 47517 TGGTGGAGCTTGTCAAAGTCGAAAC-GCTCGTTCTCAATGTCGACGTAGGTGGGGAGGGC 47459 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 || || || || || ||||| | | |||||| | |||||||||| || || || || Sbjct 47458 GAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGT 47399 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 || | || || || ||||| ||||||||||| || || ||| ||| || Sbjct 47398 GCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGCAGC 47339 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||||||||| || |||||||| || ||||| || || | || ||| || || | ||| Sbjct 47338 GTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCA 47279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479032350680