Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 127 5e-24
seq2882 104 6e-17
seq2320 93.3 1e-13
>seq3230
Length=199858
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || ||||||||||| ||||| |||| ||||||||| | | ||
Sbjct 170549 CGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTG 170490
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| || ||||| ||||||||||| | ||||| |||||||| ||| ||
Sbjct 170489 CGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCC 170430
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || |||||
Sbjct 170429 TCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCACCTCCAAG 170370
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || ||||| || || || || || ||
Sbjct 170369 GTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 170332
Score = 125 bits (138), Expect = 2e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497
|||||| || | |||||| |||| | |||| || || || |||||||| ||||||||
Sbjct 170748 CTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 170689
Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557
|||||| ||||| || ||||| |||||||| || |||||||| ||| |||
Sbjct 170688 GATGAGGCGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTT 170629
Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
|||| ||||||| || ||| || |||| ||||||||||| || ||||| || || ||
Sbjct 170628 GTCGATCGTGTCTGATGATTCAACTTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGAC 170569
Query 199618 AAAAATTTG 199626
|| |||||
Sbjct 170568 GAATATTTG 170560
Score = 118 bits (130), Expect = 2e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||||||||| |||||||| |||| ||||||||| | || | |||||
Sbjct 170312 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 170253
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||||||||||||||| ||||||||||| ||| ||| || || ||
Sbjct 170252 TCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 170193
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| |||||| |||| ||| || | | || || || | |||||| |||
Sbjct 170192 TGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTC 170133
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 170132 TTTCCAGT 170125
>seq2882
Length=147932
Score = 104 bits (114), Expect = 6e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| || || | ||||| || || ||||||||||||||||
Sbjct 6586 CCTTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 6645
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||||| |||||||| ||||| || ||||| ||||| ||| ||| |
Sbjct 6646 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGT 6705
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| |||||||| || || || |
Sbjct 6706 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 6765
Query 199620 AA 199621
||
Sbjct 6766 AA 6767
>seq2320
Length=314285
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | |||||| ||||||||||| |||| ||||||||| | | || | |||||
Sbjct 232674 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 232733
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| || ||||| ||||||||||| || ||||| ||||||||
Sbjct 232734 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGG 232774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178866119581091
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |