Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3230 138 1e-27 seq2320 93.3 5e-14 >seq3230 Length=199858 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| |||| ||||| |||||||||||||| Sbjct 170519 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 170460 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||| | || | || |||||||||| ||||||| ||| | | Sbjct 170459 ATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTAACATTG 170400 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| ||| ||||| |||| ||||| || ||||| || || || || || Sbjct 170399 TCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACG 170340 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 170339 AAGATCTGCAT 170329 Score = 113 bits (124), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| ||||| | | ||| | ||||| |||| || |||||||| || || ||||| Sbjct 170789 TATTGTCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAA 170730 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || || || |||| || ||||||||||||||||| || | |||||| || || Sbjct 170729 TCAGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCC 170670 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539 | || | | |||||||| ||||| ||||| ||| | | | |||||| || Sbjct 170669 GGTGGGATTCCTTCCTTGTCTTGAATCTTGGACTTGA-CGTTGTCGATCGTGTCTGATGA 170611 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| ||||| || ||||| || || || || || || |||||||| Sbjct 170610 TTCAACTTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || |||||| | || || |||||||| |||||||| Sbjct 170292 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAA 170233 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || ||||||||| ||||| |||| | | Sbjct 170232 GATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTCACATT 170173 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | || || || || || || | ||||||||| || || |||| Sbjct 170172 GTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCA 170123 >seq2320 Length=314285 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||| |||||||||||||| Sbjct 232694 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 232753 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| |||||| ||||| | || | || |||||||| Sbjct 232754 GATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 232792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212448491960