Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1655 343 1e-89 seq3230 127 2e-24 seq2882 113 5e-20 seq2320 86.0 6e-12 >seq1655 Length=66175 Score = 343 bits (380), Expect = 1e-89 Identities = 594/850 (70%), Gaps = 25/850 (3%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || ||||| || ||||| || || || ||||| || | | ||| ||| | Sbjct 52173 TTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTC 52114 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 |||||| || |||||||| | | |||||||||||| | |||||| | | | | Sbjct 52113 TCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGA---GTGCCAGG 52057 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 || || | |||||| |||||||||||||| || ||||| | || || || | ||| || Sbjct 52056 AGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCG-TTCATTCCGAG 51998 Query 132780 CAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 || ||||| || || || || |||||||| ||||||||| | || || ||||||| Sbjct 51997 GAG-CGCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGA 51939 Query 132839 CGATTTCCCTAACGCGC-GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897 ||| || ||| | | | | | |||| | || ||||| || ||| Sbjct 51938 TGATGTCTTCAACAACCTGGTTTGATGGCTTGTTGTTG-AGGTGGGAGAACAGCAGGCAG 51880 Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957 || |||||| |||| ||||||||| | ||| ||||| |||||| ||| || | |||| Sbjct 51879 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 51820 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 |||||||| || || || || | ||| || |||| ||||| || || ||||||| | Sbjct 51819 GGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATG 51760 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 ||||||| ||| || || || | || || | | || || | | ||| || |||| Sbjct 51759 CCCTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTCGAGTTCTTGTCGGAGATC 51700 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || ||||||||||| || ||||| | || ||| || || | ||||||||||| || Sbjct 51699 CATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAG 51640 Query 133138 AA--ACG-GAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192 | ||| | ||| || || ||| | ||| || ||||||||| || || Sbjct 51639 AGGTACGTGCGTTGCTTG-----GGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATG 51585 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || ||||| | ||||||||| |||||| || ||||| ||||| || |||||| | Sbjct 51584 TCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCGGGGA 51525 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 |||||| ||| | ||| ||||| | || || || |||||||| || ||| ||| | Sbjct 51524 TCTGCACCTCTCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCATCGGAGGCAG 51465 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CC 133369 |||| |||||||| ||||| |||||| |||||||| |||||| | ||||| || Sbjct 51464 CGAAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTGAGGCGCTTGTTCC 51405 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||||| | ||||||||||| || | ||||||| ||||||| || || |||||||| | Sbjct 51404 AGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCT 51345 Query 133430 TTTTGTACAT 133439 | |||||||| Sbjct 51344 TCTTGTACAT 51335 >seq3230 Length=199858 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || |||||| | || || ||| | | Sbjct 170329 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 170388 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| ||||| ||||| |||||| | |||||| Sbjct 170389 GACACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 170448 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || |||| ||||| ||| |||||||||| Sbjct 170449 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACAAC 170508 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| |||| || ||| | || || || Sbjct 170509 ATCCAGAAGGAATCGACTCTCCATCTCGTCCTCCG 170543 Score = 109 bits (120), Expect = 5e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || |||||||| | || |||||| || | || | | | | || | | |||| Sbjct 170125 ACTGGAAAGACCATCACGCTTGAGGTCGAGTCCTCGGATACCATCGACAATG--TGAAGA 170182 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| ||||| | ||||| ||||| ||||| | ||| || | Sbjct 170183 GCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGAA 170242 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || || | ||||||||||| ||||||||||||||| ||||| | || || | Sbjct 170243 AGCAGCTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCC 170302 Query 38446 ATTTGGTGCTGCG 38458 | |||||||| || Sbjct 170303 ACTTGGTGCTCCG 170315 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 170557 ATGCAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCA 170616 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| || ||||| || | || || Sbjct 170617 GACACGATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCA 170675 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || |||| || || || || ||||| Sbjct 170676 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAA 170735 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| || ||||| |||||||| ||| || | || || Sbjct 170736 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTGCTCCGTCTGCGTGGAGG 170783 >seq2882 Length=147932 Score = 113 bits (124), Expect = 5e-20 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| |||| || ||| | |||||| | | Sbjct 6766 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 6707 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | |||| | |||| || |||| || || |||||||| || | ||||||||||| Sbjct 6706 GACAACG--TCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGAT 6649 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || || || || || | || ||||| | ||||||||||||||||| Sbjct 6648 TGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAA 6589 Query 38431 AGG 38433 ||| Sbjct 6588 AGG 6586 >seq2320 Length=314285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || || | ||||||||||| || || | ||| ||||| || || || Sbjct 232792 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 232733 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| ||||| |||| || || ||||| || Sbjct 232732 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 232673 Query 38457 CG 38458 || Sbjct 232672 CG 232671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149835816320