Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1655 343 1e-89
seq3230 127 2e-24
seq2882 113 5e-20
seq2320 86.0 6e-12
>seq1655
Length=66175
Score = 343 bits (380), Expect = 1e-89
Identities = 594/850 (70%), Gaps = 25/850 (3%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || ||||| || ||||| || || || ||||| || | | ||| ||| |
Sbjct 52173 TTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTC 52114
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
|||||| || |||||||| | | |||||||||||| | |||||| | | | |
Sbjct 52113 TCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGA---GTGCCAGG 52057
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
|| || | |||||| |||||||||||||| || ||||| | || || || | ||| ||
Sbjct 52056 AGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCG-TTCATTCCGAG 51998
Query 132780 CAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
|| ||||| || || || || |||||||| ||||||||| | || || |||||||
Sbjct 51997 GAG-CGCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGA 51939
Query 132839 CGATTTCCCTAACGCGC-GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897
||| || ||| | | | | | |||| | || ||||| || |||
Sbjct 51938 TGATGTCTTCAACAACCTGGTTTGATGGCTTGTTGTTG-AGGTGGGAGAACAGCAGGCAG 51880
Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957
|| |||||| |||| ||||||||| | ||| ||||| |||||| ||| || | ||||
Sbjct 51879 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 51820
Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017
|||||||| || || || || | ||| || |||| ||||| || || ||||||| |
Sbjct 51819 GGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATG 51760
Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077
||||||| ||| || || || | || || | | || || | | ||| || ||||
Sbjct 51759 CCCTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTCGAGTTCTTGTCGGAGATC 51700
Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137
|| ||||||||||| || ||||| | || ||| || || | ||||||||||| ||
Sbjct 51699 CATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAG 51640
Query 133138 AA--ACG-GAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192
| ||| | ||| || || ||| | ||| || ||||||||| || ||
Sbjct 51639 AGGTACGTGCGTTGCTTG-----GGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATG 51585
Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252
| || ||||| | ||||||||| |||||| || ||||| ||||| || |||||| |
Sbjct 51584 TCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCGGGGA 51525
Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312
|||||| ||| | ||| ||||| | || || || |||||||| || ||| ||| |
Sbjct 51524 TCTGCACCTCTCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCATCGGAGGCAG 51465
Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CC 133369
|||| |||||||| ||||| |||||| |||||||| |||||| | ||||| ||
Sbjct 51464 CGAAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTGAGGCGCTTGTTCC 51405
Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429
||||| | ||||||||||| || | ||||||| ||||||| || || |||||||| |
Sbjct 51404 AGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCT 51345
Query 133430 TTTTGTACAT 133439
| ||||||||
Sbjct 51344 TCTTGTACAT 51335
>seq3230
Length=199858
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || |||||| | || || ||| | |
Sbjct 170329 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 170388
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || |||| ||||| ||||| |||||| | ||||||
Sbjct 170389 GACACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 170448
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| || || || |||| ||||| ||| ||||||||||
Sbjct 170449 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACAAC 170508
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| |||||| |||| || ||| | || || ||
Sbjct 170509 ATCCAGAAGGAATCGACTCTCCATCTCGTCCTCCG 170543
Score = 109 bits (120), Expect = 5e-19
Identities = 142/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| || || |||||||| | || |||||| || | || | | | | || | | ||||
Sbjct 170125 ACTGGAAAGACCATCACGCTTGAGGTCGAGTCCTCGGATACCATCGACAATG--TGAAGA 170182
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| || | ||||| ||||| ||||| | ||||| ||||| ||||| | ||| || |
Sbjct 170183 GCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGAA 170242
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || || | ||||||||||| ||||||||||||||| ||||| | || || |
Sbjct 170243 AGCAGCTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCC 170302
Query 38446 ATTTGGTGCTGCG 38458
| |||||||| ||
Sbjct 170303 ACTTGGTGCTCCG 170315
Score = 102 bits (112), Expect = 8e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || ||||| ||||| || ||||| | || || || | |
Sbjct 170557 ATGCAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCA 170616
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| || ||||| || | || ||
Sbjct 170617 GACACGATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCA 170675
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| ||||| ||||| || |||| || || || || |||||
Sbjct 170676 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAA 170735
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || ||||| ||| || ||||| |||||||| ||| || | || ||
Sbjct 170736 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTGCTCCGTCTGCGTGGAGG 170783
>seq2882
Length=147932
Score = 113 bits (124), Expect = 5e-20
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| |||| || ||| | |||||| | |
Sbjct 6766 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 6707
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| |||| | |||| || |||| || || |||||||| || | |||||||||||
Sbjct 6706 GACAACG--TCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGAT 6649
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || || || || || | || ||||| | |||||||||||||||||
Sbjct 6648 TGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAA 6589
Query 38431 AGG 38433
|||
Sbjct 6588 AGG 6586
>seq2320
Length=314285
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| || || || || | ||||||||||| || || | ||| ||||| || || ||
Sbjct 232792 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 232733
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | |||||||| ||||||||||||||| ||||| |||| || || ||||| ||
Sbjct 232732 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 232673
Query 38457 CG 38458
||
Sbjct 232672 CG 232671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500149835816320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |