Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1655 224 2e-53 seq1589 188 1e-42 >seq1655 Length=66175 Score = 224 bits (248), Expect = 2e-53 Identities = 568/861 (66%), Gaps = 30/861 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||||||||| ||||| |||||| Sbjct 51326 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 51385 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| | ||| |||| || | ||| ||||| ||| || ||| | Sbjct 51386 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCT 51445 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| |||| ||||| || ||||| ||||| || || || ||||| || ||| | Sbjct 51446 CACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCTCATTGAGCGC 51505 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || |||||| | |||||| || |||||||||||||| || || Sbjct 51506 TTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGATG 51565 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || || | ||| || ||||| ||| || | Sbjct 51566 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGAT-ACATACAT--CAG-CGAGCC 51621 Query 25773 CGAGAGA-GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | || | | || || || |||||||| |||| || ||||| | |||||| Sbjct 51622 CAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGC 51681 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || |||||| | | ||| | | || |||| | || || | || Sbjct 51682 TGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCGACCTTTGCCTGCCGTCTCATCGC 51741 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| || | ||||||||||| ||| ||| || || ||| ||||||||||| | || Sbjct 51742 CTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAA 51801 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| || ||| ||||||||||||||| | | |||||||| Sbjct 51802 GAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGG 51861 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 | |||| || || ||||||||||| | | | |||| | | |||| || || | Sbjct 51862 CATGCACACCGACTTCGCCTGCCTGCTGTTCTC---CCACCTCAACAACAAGCCATCAAA 51918 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 || || | ||||||| ||||| || | |||||| ||||||||| Sbjct 51919 CCAGGTTGTTGAAGACATCATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGA 51978 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | || |||||| || |||||| |||| ||||| |||| Sbjct 51979 CGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAGTT 52038 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTACGC- 26242 || ||||||| ||| || |||| ||||| ||||| | ||||| |||| Sbjct 52039 CGTCGCCGACCGTCT------CCTCCTGGCACTCGGCAACCAGAAGCACTACA--ACGCC 52090 Query 26243 -CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | ||||| |||||||||||||| ||||| || | | ||| || ||||||||||| || Sbjct 52091 ACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAG 52150 Query 26302 AAGAGGGTCGGCGACTATCAA 26322 ||| | ||||||||||| ||| Sbjct 52151 AAGCGTGTCGGCGACTACCAA 52171 >seq1589 Length=144912 Score = 188 bits (208), Expect = 1e-42 Identities = 938/1465 (64%), Gaps = 59/1465 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || |||||||| ||||||||||| |||||| ||||||| || | ||||| || Sbjct 47736 GTGAGAGCAGCGTGATAGATGGTCTCGAAGATCTGAATGTTGAG-CTGGCGAGCCTCAGG 47678 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| ||| ||||| ||||| | ||||| | ||||| || || | || |||| || Sbjct 47677 AGAGTCGAAAGGCATGCGCAGAGCCAAGAAAG-CATCGGCAAGACCGTTGACACCGAGAC 47619 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||||| | ||| | |||| | || |||||||| || || |||||| | Sbjct 47618 CGATGGGACGGTGACGGAAGTTGCTCTTGCGAGCCTCTGGCACTGGGTAGTGGTTGACCT 47559 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||| | |||| |||| | || | |||| | ||||| || | Sbjct 47558 CGATGATCTTGTTCAAGTTCTTGGTGACGGTTTGAGTGACCTGGTGGAGCTT---GTCA- 47503 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714 || | || ||| ||| | | | || || | | | ||||| | | Sbjct 47502 --AAGTCGAAA-CGCT--CGTTCTCAATG---TCGACGTAGGTGGGGAGGGCGAGAGATG 47451 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 | ||||| |||||||| ||||| || || |||| |||||||| || ||||||| Sbjct 47450 CAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGT 47391 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 || || ||||||||||| || || || || ||||| |||||||||||||||| Sbjct 47390 TGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGT 47331 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 |||| || | || ||| ||||| ||||||| | || || || |||||| | || Sbjct 47330 AGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCAGAGCT-TC 47272 Query 221895 TG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 || |||| || || ||| ||| ||| | | || || | || | || || ||| Sbjct 47271 TGAGCGCGGACTGT-CTCACGACCCTTGCCCTCACGCTCGTATC--GCTCG---TACAGC 47218 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 || |||| | ||||| | || |||| || || ||| | || ||||||| | Sbjct 47217 TCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAA 47158 Query 222011 CTCC-AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||| |||| |||| | | || | || |||||| || || || | ||| || | | Sbjct 47157 GTCCAAGTG-GTGTTCTGCTCAACACGCTTCATGAACAGATCAGGCACCCAGAGACCGTA 47099 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || | ||| | || || ||||||| |||| ||| || | |||||||| || Sbjct 47098 GAACAAATCGCGGGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGA 47039 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | || |||||||| ||||| | || | ||| | ||| || |||||||||||||| Sbjct 47038 GAAGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCACCAGGTCGCTTGTTGCC 46979 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||||| || | | | | || | ||| || | || || | ||||| || | Sbjct 46978 GCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGAC 46923 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305 |||||||| ||||| || || | ||||| || || || | || | | | | Sbjct 46922 CGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGC---GGATGCGGTGAA 46866 Query 222306 ACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 || ||||| || || |||| || ||||||||||||||| |||| | ||||| Sbjct 46865 CGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTCGT 46806 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 |||||| || || ||| ||||| | || | || || || || | || ||||| | Sbjct 46805 AGATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGT 46746 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 ||| | | |||| | |||||||| || || ||||| ||||| | ||||| Sbjct 46745 TGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGACATGT 46686 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 | ||| ||||| | | | | |||| || ||||| || | || | || Sbjct 46685 AGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAACACGCA 46626 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACGATT 222599 || ||| | || || |||| | | | ||||| | || || ||||| ||| Sbjct 46625 TGATCATCTGTTGTGGTCTCT---CGGCAACCTTGCCGTTGATCCTCAGAAGGTATGATC 46569 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 | ||||| |||||||| |||||||| | | || ||||| | ||| ||| | ||| Sbjct 46568 TCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGATCGTAAACGATAGCGC 46509 Query 222660 CGTCCAGCTCCGACTT--GTGCTTTACGCTCAACTCGAAAAAG--CGCTCAGACACGAGG 222715 || ||||| | || || ||| ||| | ||| | | | ||| || | | | Sbjct 46508 TGTTGAGCTC--ATTTGCGTTCTTGACGACC--GTCGCATATGTCTCCTCGGAGATCATG 46453 Query 222716 GGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAG 222775 || || |||| | ||| | ||||| | || || ||| || | | | || | ||| Sbjct 46452 GGTGCCTTCTTTCCGGTCTTTGGGTTGATGTAGTTGTAAAGGTCCTCGACAACAGCGGAG 46393 Query 222776 AAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACC 222834 ||| | || | ||||||||||| || || || |||||||| || | || | ||| | Sbjct 46392 AACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATGCGTGCGGCGAGGATGGC 46334 Query 222835 ATAGTCAGGGTGCACGGTGGTCATG 222859 ||||| ||||| | ||||||| Sbjct 46333 GTAGTCGGGGTGGGTGACGGTCATG 46309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802154413120