Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1275 105 2e-17 >seq1275 Length=166772 Score = 105 bits (116), Expect = 2e-17 Identities = 179/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622 |||||||| || |||| ||||| | ||||||||||||||| ||||| | || Sbjct 122267 ATCATAATCTCCTCCAGCGCCTTGACAAGACGACGCTGAATATATCCAGTCTCGGCAGTC 122326 Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682 || ||||| |||||||| ||||| | ||||||||||| || |||||||| | ||| | Sbjct 122327 TTGACAGCGGTATCAATCAGACCTTCTCGACCACCCATGGCGTGGAAGAAGAACTCCT-G 122385 Query 302683 GGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 || ||| || || | || | | ||| |||| || || || || | | ||||| | || Sbjct 122386 GGGCGTGAGGCCACGAAGATAAGAGTTCTCGACAAATCCTCGTGATGCCGGCGAGTAATC 122445 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 | ||||| || || ||||| | || | | ||||| | || | ||||| || || Sbjct 122446 GTCCTTGGGGAAATGGGGCAGCACACGGTATTTAAAGCCGAACGGCAATCGCTTGCCCTC 122505 Query 302802 AACGTTCTGCTGTCCCA 302818 | ||||||||||| Sbjct 122506 GAGAGACTGCTGTCCCA 122522 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| |||||| || || || |||||||| ||||||||| | || Sbjct 20304 TGAGCGATTGTCATACGGGAGGGAATGGCGTGAGGGTTGATGATAATGTCGGGTGTGAGA 20363 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 ||||| || | ||| ||||| || | || | || || | || || || |||||||| Sbjct 20364 CCATCGGCGGAGAAAGGCATGTCTTCTTGG-CGGTAGGTGATGCCGATGGTACCCTTTTG 20422 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| |||||| || || || Sbjct 20423 TCCGTGACGAGAGGCGAACTTGTCTCCGAT 20452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471748335803801