Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1655 163 3e-34 seq2857 132 6e-25 seq1589 127 2e-23 seq2842 100 3e-15 seq2752 93.3 5e-13 >seq1655 Length=66175 Score = 163 bits (180), Expect = 3e-34 Identities = 226/314 (72%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| |||||| |||||||| ||||| |||| ||||| Sbjct 52176 GCCTTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATG 52117 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||||||||||| | | ||||| | | | Sbjct 52116 TTCTCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGG 52057 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| ||||||||||||||||||||||| ||||||||| |||| | Sbjct 52056 AGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGG 51997 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||||| || || | || | | |||||| | |||||| | ||||||||| |||| Sbjct 51996 AGCGCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGATG 51937 Query 868931 ATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 || | | | | || | | || ||||||||| ||| | | | ||||||||||| Sbjct 51936 ATGT-CTTCAACAACCTGGTTTGATGGCTTGTTGTTGAGGTGGGAGAACAGCAGGCAGGC 51878 Query 868990 AAAGTCGCAGTGCA 869003 |||||| ||||| Sbjct 51877 GAAGTCGGTGTGCA 51864 Score = 132 bits (146), Expect = 6e-25 Identities = 207/289 (72%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| ||||||||||||||| || |||||| Sbjct 51861 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTC 51802 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| ||| || ||||| ||||||||||||| ||||||||| Sbjct 51801 TTCAACCAGAAGATGGACGC-GAATGATCCGGAGAAGAAGATGCCCTCGATGGCGGCAAA 51743 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | ||||||| || ||||||| |||||| | ||||| |||||| || ||| Sbjct 51742 GGCGATGAGACGGCAGGCAAAG--GTCGAG----TTCTTGTCGGAGATCCATCGCAGCGC 51689 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 |||||| ||||| || | | | || | ||||||||||| ||||||| || | Sbjct 51688 CCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTACGTGCG 51629 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || | || || ||| || || ||||| ||||| || || ||||| Sbjct 51628 TTGC-TTGGGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATGTCTC 51581 >seq2857 Length=174093 Score = 132 bits (146), Expect = 6e-25 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | |||||||| || |||||| | ||||||||| | || ||||| | || Sbjct 15889 CTCTTCGAGATCATCCTCGCTGCGAACTACATGGACATCAAGGCGCTTCTCGACGTCGGC 15948 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | |||||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct 15949 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCACCAGAGGAGATTCGCAAAACCTTC 16008 Query 1592288 AACATC 1592293 |||||| Sbjct 16009 AACATC 16014 >seq1589 Length=144912 Score = 127 bits (140), Expect = 2e-23 Identities = 210/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || |||| |||||| || || |||||||| ||||| ||||| Sbjct 46978 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 46919 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||| || || | ||| || || | ||||| | ||| || | Sbjct 46918 GGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGCGGATGCGGTGAACGTTGAG 46859 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||||||||| || ||||||||| | ||||| || | |||||||||||||| Sbjct 46858 TCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTCGTAGATGCC 46799 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||| |||||||||| | ||| ||||| || | || | || | || Sbjct 46798 ATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGT 46739 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||| |||| ||||| |||| || ||||| ||| ||||||| || ||| Sbjct 46738 TCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGACATGTAGTTGTA 46679 Query 1630362 GGT 1630364 ||| Sbjct 46678 GGT 46676 Score = 109 bits (120), Expect = 7e-18 Identities = 118/155 (76%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||||||||| || || ||||| || ||| || | |||||||||||| Sbjct 59791 GACAGCATCGGCGGCACCGTCACCTGCGTCATCCGTAACTGTCCCTCCGGCCTCGGCGAG 59732 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| ||||| |||| ||| | ||||| ||||||||||| ||||| || ||| Sbjct 59731 CCCTGCTTCGACAAACTCGAAGCCACCCTCGCACACGCCATGCTCAGCATCCCCGCGACC 59672 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTG 19200 || || ||||| || ||| ||| || ||||||| Sbjct 59671 AAAGGCTTCGAAATCGGCTCCGGATTCGGCGGGTG 59637 Score = 107 bits (118), Expect = 2e-17 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 1627296 CCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCC 1627355 ||||||||| ||| | | || | ||||| || ||||||| || || ||||| Sbjct 48067 CCACAGGCCACGCTCAACCAAGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCGCC 48008 Query 1627356 CGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGCCTCGGTGTTGC 1627414 | |||||| || || | |||||||||| ||||| ||| | ||| | |||| || | Sbjct 48007 AGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC-TCGAAGCACTCGTTGAAAC 47949 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 ||| ||||||||| || | || || |||||| | || ||||||||||||||||| | | Sbjct 47948 CCATGATCTGCGAGGTGGATGCAGTCGGCATGGGAGCGACGAGGAGCGAGTTGCGAACAC 47889 Query 1627475 CGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAG 1627515 |||||| | ||| || | || || ||| ||||||||||| Sbjct 47888 CGTGCTCGGCGATCTTG-GCCTTGAGTGCGGCCCAGTCCCAG 47848 Score = 100 bits (110), Expect = 3e-15 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||||||||| ||||||| | || | || |||| ||||| ||||||| Sbjct 47414 ACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCG-GATGGTCCCCAAGTTCTTCTGGTTG 47356 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | |||| | |||||||||| ||| ||||| |||| |||||||||| |||| ||| Sbjct 47355 CTCTTGCCGTTGGCAGCGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCC 47296 Query 1628281 GCGACGATGGCCGACCAGATCT 1628302 ||| |||||| |||||| || Sbjct 47295 TCGAGGATGGCGTACCAGAGCT 47274 Score = 86.0 bits (94), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 18088 GTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCG 18147 |||||||||| ||||| |||||||| ||||||| |||||| ||||||| ||||| Sbjct 60427 GTCACCACCTACGGCGAATCGCACGGCAAAAGCGTCGGATGCATCGTCGACGGTGTGCCT 60368 Query 18148 CCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGC 18207 || || | || |||| || || ||||| || || || || || || || Sbjct 60367 CCAGGCCTCGAGCTCACCGAAGCTGATATCCAACCCTCCATGACCCGCCGTCGTCCTGGG 60308 Query 18208 CAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACG 18267 ||| ||||||| | || || ||| ||||| ||| || |||||||||||||| Sbjct 60307 CAGAGCGCACTCACGACACCTCGCGACGAGAAAGATATGGTGGAAATCCAGTCGGGCACA 60248 Query 18268 GAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCC 18301 ||| | || |||| | || || ||||| |||| Sbjct 60247 GAGCATGGAATCACATTGGGTTCACCCGT-GGCC 60215 >seq2842 Length=133559 Score = 100 bits (110), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1852487 GGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAG 1852546 |||| |||| |||||||||| | |||| || || || | |||||||||||| ||| Sbjct 39503 GGCGCCTTGAGGTTGTCGAGGAAGCCGTGGACATCAGCGAGGAGGATCTTGACTTCACAT 39444 Query 1852547 CCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTG 1852606 ||||| ||||| ||||| | || || || ||||||||||| || ||| || ||| Sbjct 39443 CCGGCAGCCAGAAATTCGGCAATCTTCAACATAGGCACAAAGTATCCGCAGTGAGGTTTG 39384 Query 1852607 CCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTCGGCCATG 1852654 || |||| ||| |||||||| || || |||| || | ||| || || Sbjct 39383 CCTGTCGTCGCAGTGCCCCAGTAGATCTTCAGCGGCCTTTCGCCCTTG 39336 >seq2752 Length=254214 Score = 93.3 bits (102), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | ||| || || |||| ||| ||||| ||||| | | || Sbjct 205364 GCTTGGCCAGCTCACCGGGGAGGATGAGTCGGACGGAGGTTTGGATTTCGCGGGAGGAGA 205305 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| | ||| || | |||||||| ||| ||| |||| | Sbjct 205304 TGGTTGACTTCTTGTTGTATGCCGCAAGCTTGGAAGCCTCGGTTGCGACGCGCTCGAAGA 205245 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || ||||||| || ||||| | ||||||||| || || |||| Sbjct 205244 TGTCGTTGACGAAGGAGTTCAGGATGGACATGGCGCGGTTGGAGATACCAGTATCAGGGT 205185 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAA 1254550 | ||||||||||| || || ||||||| Sbjct 205184 GGACCTGCTTGAGGAC--TGGAGATGAA 205159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106837776419341