Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1655 154 2e-31 seq2752 147 3e-29 seq2857 129 9e-24 seq1589 107 3e-17 seq2842 87.8 3e-11 >seq1655 Length=66175 Score = 154 bits (170), Expect = 2e-31 Identities = 227/316 (72%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| || ||| |||||| |||||||| ||||| ||| Sbjct 52184 TGACACCGGCCTTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGA 52125 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||| | | ||||||||||| | |||| Sbjct 52124 GGGAGATGTTCTCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGA 52065 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || |||||||||||||| || ||||||||||||||||| |||||||| Sbjct 52064 GTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCA 52005 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 | |||| |||||| || ||| || | || ||| |||||| | |||||| | |||||| Sbjct 52004 TTCCGAGGAGCGCACATGGG-AGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCC 51946 Query 794130 TCGATGATGATCTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 ||| ||||||| | | | | || | | || ||||||| | ||| | | | || Sbjct 51945 TCGGTGATGATGT-CTTCAACAACCTGGTTTGATGGCTTGTTGTTGAGGTGGGAGAACAG 51887 Query 794189 CAGGCAGGCAAAGTCG 794204 ||||||||| |||||| Sbjct 51886 CAGGCAGGCGAAGTCG 51871 Score = 149 bits (164), Expect = 1e-29 Identities = 233/330 (71%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||| ||| ||||||||||||||| || |||||| Sbjct 51861 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTC 51802 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||| || ||||| ||||||||||||| |||||||||| Sbjct 51801 TTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATGCCCTCGATGGCGGCAAAG 51742 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||| || |||||| || | | || | | |||||| || |||||| Sbjct 51741 GCGATGAGACGGCAGGCAAAGGT---CGAGTTCTTGTCGGAGATCCATCGCAGCGCCCAG 51685 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC--TTC 794577 || ||||| || | | | || | ||||||||||| ||||||| || | | | Sbjct 51684 TCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTACGTGCGTTGC 51625 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | || || ||| ||| || ||||||||||| ||||| ||||| ||||||||||| Sbjct 51624 TTG---GGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATGTCTCGGAGTGGATGTTC 51568 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || ||| ||||| || || |||||| Sbjct 51567 TCCATCATGATTTGGAAACCGTAGAAGCAG 51538 >seq2752 Length=254214 Score = 147 bits (162), Expect = 3e-29 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || || |||||| ||||||| || ||| | | Sbjct 205402 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACAGCGTGCTTGGCCAGCTCACCGGGGAG 205343 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT-AGTGC 1485589 ||| || || |||| ||| ||||| ||||||| | ||| || |||||| ||| Sbjct 205342 GATGAGTCGGACGGAGGTTTGGATTTCGCGGGAGGAGATGGTTGACTTCTTGTTGTATGC 205283 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | |||||||| ||| ||| |||| ||||||||||| || ||||||| Sbjct 205282 -CGCAAGCTTGGAAGCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 205224 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| ||||| | ||||||||| || || ||||| ||||||||||| || Sbjct 205223 GGATGGACATGGCGCGGTTGGAGATACCAGTATCAGGGTGGACCTGCTTGAGGAC 205169 >seq2857 Length=174093 Score = 129 bits (142), Expect = 9e-24 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| | |||||||| || |||||| | ||||||||| | || ||||| | || Sbjct 15889 CTCTTCGAGATCATCCTCGCTGCGAACTACATGGACATCAAGGCGCTTCTCGACGTCGGC 15948 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||||||||||||| | |||||||||||||| || ||||| || ||||| ||||| Sbjct 15949 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCACCAGAGGAGATTCGCAAAACCTTC 16008 Query 2035749 AACATC 2035754 |||||| Sbjct 16009 AACATC 16014 >seq1589 Length=144912 Score = 107 bits (118), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || |||| |||||| || || |||||||| || || ||||| Sbjct 46978 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 46919 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||| || || | ||| || || | ||||| | ||| || | Sbjct 46918 GGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGCGGATGCGGTGAACGTTGAG 46859 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||||||||| || ||||||||| | ||||| | |||| || ||||||||||| Sbjct 46858 TCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTCGTAGATGCC 46799 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || || ||| |||||||||| | || ||||| || Sbjct 46798 ATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGA 46760 Score = 89.7 bits (98), Expect = 8e-12 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 2069565 CCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGCC 2069624 ||||||||| ||| | | || | || || || ||||||| || || ||||| Sbjct 48067 CCACAGGCCACGCTCAACCAAGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCGCC 48008 Query 2069625 CGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTCGGTGTTGC 2069683 | |||||| || || | |||||||||||| ||| ||| | ||| | |||| || | Sbjct 48007 AGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC-TCGAAGCACTCGTTGAAAC 47949 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 ||| ||||||||| || | || || |||||| | || ||||| ||||||||||| | | Sbjct 47948 CCATGATCTGCGAGGTGGATGCAGTCGGCATGGGAGCGACGAGGAGCGAGTTGCGAACAC 47889 Query 2069744 CGTACT-GTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAG 2069784 ||| || | || | | ||| || ||| ||||||||||| Sbjct 47888 CGTGCTCGGCG-ATCTTGGCCTTGAGTGCGGCCCAGTCCCAG 47848 >seq2842 Length=133559 Score = 87.8 bits (96), Expect = 3e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 2411830 GGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACAT 2411889 |||| |||| ||||||||| | |||| || || || | ||||||| | || |||| Sbjct 39503 GGCGCCTTGAGGTTGTCGAGGAAGCCGTGGACATCAGCGAGGAGGATCTTGACTTCACAT 39444 Query 2411890 CCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTT 2411948 ||||| ||||| ||||| | || || || ||||||||||| || ||| || || || Sbjct 39443 CCGGCAGCCAGAAATTCGGCAATCTTCAACATAGGCACAAAGTATCCGCAG-TGAGGTTT 39385 Query 2411949 GCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||| |||| ||| |||||||| || || Sbjct 39384 GCCTGTCGTCGCAGTGCCCCAGTAGAT 39358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915855686237447