Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1655 154 2e-31
seq2752 147 3e-29
seq2857 129 9e-24
seq1589 107 3e-17
seq2842 87.8 3e-11
>seq1655
Length=66175
Score = 154 bits (170), Expect = 2e-31
Identities = 227/316 (72%), Gaps = 4/316 (1%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| || ||| |||||| |||||||| ||||| |||
Sbjct 52184 TGACACCGGCCTTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGA 52125
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||| | | ||||||||||| | ||||
Sbjct 52124 GGGAGATGTTCTCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGA 52065
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | || || |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 52064 GTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCA 52005
Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
| |||| |||||| || ||| || | || ||| |||||| | |||||| | ||||||
Sbjct 52004 TTCCGAGGAGCGCACATGGG-AGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCC 51946
Query 794130 TCGATGATGATCTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188
||| ||||||| | | | | || | | || ||||||| | ||| | | | ||
Sbjct 51945 TCGGTGATGATGT-CTTCAACAACCTGGTTTGATGGCTTGTTGTTGAGGTGGGAGAACAG 51887
Query 794189 CAGGCAGGCAAAGTCG 794204
||||||||| ||||||
Sbjct 51886 CAGGCAGGCGAAGTCG 51871
Score = 149 bits (164), Expect = 1e-29
Identities = 233/330 (71%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||| | |||||| ||| ||||||||||||||| || ||||||
Sbjct 51861 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTC 51802
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| | ||| ||||||| ||| || ||||| ||||||||||||| ||||||||||
Sbjct 51801 TTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATGCCCTCGATGGCGGCAAAG 51742
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
||| ||| || |||||| || | | || | | |||||| || ||||||
Sbjct 51741 GCGATGAGACGGCAGGCAAAGGT---CGAGTTCTTGTCGGAGATCCATCGCAGCGCCCAG 51685
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC--TTC 794577
|| ||||| || | | | || | ||||||||||| ||||||| || | | |
Sbjct 51684 TCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTACGTGCGTTGC 51625
Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637
| | || || ||| ||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct 51624 TTG---GGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATGTCTCGGAGTGGATGTTC 51568
Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| || ||| ||||| || || ||||||
Sbjct 51567 TCCATCATGATTTGGAAACCGTAGAAGCAG 51538
>seq2752
Length=254214
Score = 147 bits (162), Expect = 3e-29
Identities = 175/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| || || |||||| ||||||| || ||| | |
Sbjct 205402 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACAGCGTGCTTGGCCAGCTCACCGGGGAG 205343
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT-AGTGC 1485589
||| || || |||| ||| ||||| ||||||| | ||| || |||||| |||
Sbjct 205342 GATGAGTCGGACGGAGGTTTGGATTTCGCGGGAGGAGATGGTTGACTTCTTGTTGTATGC 205283
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||| || | |||||||| ||| ||| |||| ||||||||||| || |||||||
Sbjct 205282 -CGCAAGCTTGGAAGCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 205224
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||| ||||| | ||||||||| || || ||||| ||||||||||| ||
Sbjct 205223 GGATGGACATGGCGCGGTTGGAGATACCAGTATCAGGGTGGACCTGCTTGAGGAC 205169
>seq2857
Length=174093
Score = 129 bits (142), Expect = 9e-24
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688
||||| ||| | |||||||| || |||||| | ||||||||| | || ||||| | ||
Sbjct 15889 CTCTTCGAGATCATCCTCGCTGCGAACTACATGGACATCAAGGCGCTTCTCGACGTCGGC 15948
Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748
|||||||||||||||||| | |||||||||||||| || ||||| || ||||| |||||
Sbjct 15949 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCACCAGAGGAGATTCGCAAAACCTTC 16008
Query 2035749 AACATC 2035754
||||||
Sbjct 16009 AACATC 16014
>seq1589
Length=144912
Score = 107 bits (118), Expect = 3e-17
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| ||||||||| ||||| || |||| |||||| || || |||||||| || || |||||
Sbjct 46978 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 46919
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
||| ||||| || || | ||| || || | ||||| | ||| || |
Sbjct 46918 GGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGCGGATGCGGTGAACGTTGAG 46859
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
||||||||||| || ||||||||| | ||||| | |||| || |||||||||||
Sbjct 46858 TCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTCGTAGATGCC 46799
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755
|| || ||| |||||||||| | || ||||| ||
Sbjct 46798 ATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGA 46760
Score = 89.7 bits (98), Expect = 8e-12
Identities = 156/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 2069565 CCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGCC 2069624
||||||||| ||| | | || | || || || ||||||| || || |||||
Sbjct 48067 CCACAGGCCACGCTCAACCAAGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCGCC 48008
Query 2069625 CGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTCGGTGTTGC 2069683
| |||||| || || | |||||||||||| ||| ||| | ||| | |||| || |
Sbjct 48007 AGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC-TCGAAGCACTCGTTGAAAC 47949
Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743
||| ||||||||| || | || || |||||| | || ||||| ||||||||||| | |
Sbjct 47948 CCATGATCTGCGAGGTGGATGCAGTCGGCATGGGAGCGACGAGGAGCGAGTTGCGAACAC 47889
Query 2069744 CGTACT-GTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAG 2069784
||| || | || | | ||| || ||| |||||||||||
Sbjct 47888 CGTGCTCGGCG-ATCTTGGCCTTGAGTGCGGCCCAGTCCCAG 47848
>seq2842
Length=133559
Score = 87.8 bits (96), Expect = 3e-11
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 2411830 GGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACAT 2411889
|||| |||| ||||||||| | |||| || || || | ||||||| | || ||||
Sbjct 39503 GGCGCCTTGAGGTTGTCGAGGAAGCCGTGGACATCAGCGAGGAGGATCTTGACTTCACAT 39444
Query 2411890 CCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTT 2411948
||||| ||||| ||||| | || || || ||||||||||| || ||| || || ||
Sbjct 39443 CCGGCAGCCAGAAATTCGGCAATCTTCAACATAGGCACAAAGTATCCGCAG-TGAGGTTT 39385
Query 2411949 GCCCGTCGGCGCGGTGCCCCAATAAAT 2411975
||| |||| ||| |||||||| || ||
Sbjct 39384 GCCTGTCGTCGCAGTGCCCCAGTAGAT 39358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915855686237447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |