Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 102 5e-17
seq2320 98.7 6e-16
seq2882 95.1 8e-15
>seq3230
Length=199858
Score = 102 bits (112), Expect = 5e-17
Identities = 139/192 (72%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| ||| ||||| ||||
Sbjct 170312 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 170253
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||||||||| || || ||||||||| | || | |||||||||||
Sbjct 170252 TCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 170193
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || | ||||| || || |||||| |||| || ||
Sbjct 170192 TGAATCTTGCTCTTCAC--AT--TGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGAT 170137
Query 34942 GGTCTTTCCCGT 34953
||||||||| ||
Sbjct 170136 GGTCTTTCCAGT 170125
Score = 102 bits (112), Expect = 5e-17
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||||||| ||||| ||||| || || |||| | || || |||||||| |||||||||
Sbjct 170519 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 170460
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|||| ||| || ||||| | || | ||||||||||| | || || || || ||
Sbjct 170459 ATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTAAC--AT 170402
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| || | ||| || || | ||| || ||||| || |||||||||||
Sbjct 170401 --TGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTT 170344
Query 34963 TACAAAGATCTGCAT 34977
|| |||||||||||
Sbjct 170343 GACGAAGATCTGCAT 170329
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809
|||||| | || | || |||| ||| | ||||||||||||||||||||| || || ||
Sbjct 170784 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 170725
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
|| | || | || || || ||||| ||||||||||| || || || || || | ||
Sbjct 170724 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 170665
Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929
| || |||||||| | || || |||||| | |||| || | || ||
Sbjct 170664 GATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAAC 170605
Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || || ||||| || ||||| ||||| || || || |||||
Sbjct 170604 TTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
>seq2320
Length=314285
Score = 98.7 bits (108), Expect = 6e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 232674 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 232733
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| |||||||||||||| || || ||||| | || | || ||||||||
Sbjct 232734 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 232792
>seq2882
Length=147932
Score = 95.1 bits (104), Expect = 8e-15
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 34782 TGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841
||| | |||| || ||||| ||||| ||| | || |||| || |||||||||||||
Sbjct 6580 TGCGCACCTTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGG 6639
Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901
||||||||| ||| || ||||| | || | |||||||| || | || || ||||
Sbjct 6640 CGAAGATCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGA 6699
Query 34902 CGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
|| | || | || | ||| || || | ||| |||||||| |||||||||||||
Sbjct 6700 CGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCT 6759
Query 34962 TTACAAA 34968
| || ||
Sbjct 6760 TGACGAA 6766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325678220463587
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |