Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1589 183 3e-41 seq1655 84.2 2e-11 seq3230 82.4 7e-11 >seq1589 Length=144912 Score = 183 bits (202), Expect = 3e-41 Identities = 625/959 (65%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTC 147518 ||||| ||| || || ||||| ||||| ||| || | | |||||| | ||| || Sbjct 47461 GGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTC 47402 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTT-CCGATTGC 147577 || ||| |||||| || ||| ||||| || | ||| ||||| || ||| | || Sbjct 47401 GGTGCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGC 47342 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACC 147637 | ||||| ||| |||| ||||| || |||||||||| || | || | ||| | Sbjct 47341 A-GCGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGG-CG 47284 Query 147638 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 || || | ||| || || || || ||| |||||| ||||| |||||| Sbjct 47283 TACCAGAGCTTCTGAGCGCGGACTGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCG 47224 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 |||| | ||| ||||| |||||||| ||| || || ||||| |||| || || ||| Sbjct 47223 TACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCAC 47164 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 |||| | ||| || || | | ||| || ||| |||||||| |||||||| || Sbjct 47163 ATCAAAGTCCAAGTGGTGTTCTGCTCAACACGCTTCATGAACAGATCAGGCACCCAGAGA 47104 Query 147817 GCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTC--AAATT 147872 |||| | | |||||| || | | |||| | || || | | || | | || Sbjct 47103 CCGTAGAACAAATCGCGGGCA---CGAACCTCCTCCTTTCCGTGGTTC-TTGCGGAGATC 47048 Query 147873 -AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTAC 147931 ||| | | | ||| || |||||||| || || ||||| | ||| | ||||| | Sbjct 47047 CAAGAAGGAGA-AGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCACCAGGTC 46989 Query 147932 GCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTT 147988 |||| |||||||||||||| | ||| | ||||||||||||| |||| ||||||| Sbjct 46988 GCTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTA 46929 Query 147989 CCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCG 148047 | || ||| | | || ||||| || |||| | |||| || || || | | Sbjct 46928 CGAGACCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCT-CCAGTCGCGCGGATGCGG 46870 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 || ||||| | || |||||||| ||| ||| || || ||||| ||| || Sbjct 46869 TGAACGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTG 46810 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||| || |||||||| | || | | | | | || || || || || Sbjct 46809 TCGTAGATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGA 46750 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 | | | ||||| || ||| || || || || || || || | || | | Sbjct 46749 GCGTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGAC 46690 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 || | || |||||||| || || ||||| || ||||| ||||| | || || Sbjct 46689 ATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAACA 46630 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||||| ||| || ||||||| |||||||| | ||||||| | ||||| ||| Sbjct 46629 CGCATGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGATCCTCAGAAGGTATGAT 46570 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | || || || ||| | |||||||| | ||| | || || | |||||| |||| || Sbjct 46569 CTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGATCGTAAACGATAGC 46511 >seq1655 Length=66175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || |||||| |||||||| | || | || || || || | || || Sbjct 51944 GAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGA 52003 Query 47106 ATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 47165 |||||||| || |||||| | || || ||||| || || || ||||| | || Sbjct 52004 ATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCA 52063 Query 47166 CTCGGACAACC-GAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 ||||| ||||| ||| | | || || || || || || |||||| | ||||| || Sbjct 52064 CTCGG-CAACCAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGAACATCTC 52122 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||| ||||||||||| || |||||||| || ||||| || || Sbjct 52123 CCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 52167 >seq3230 Length=199858 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | ||||| || || |||||||||||||| | ||| Sbjct 170322 ACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGT 170263 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| || ||||| || |||||||| ||||| Sbjct 170262 GCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCC 170203 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || |||| | || | ||||| | | ||| || || | Sbjct 170202 CTCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAG 170143 Query 132082 CGTCAGCGTTTTACCAGTCA 132101 ||| | || || ||||||| Sbjct 170142 CGTGATGGTCTTTCCAGTCA 170123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589317588280