Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1655 219 6e-51 seq1589 109 8e-18 seq2752 107 3e-17 >seq1655 Length=66175 Score = 219 bits (242), Expect = 6e-51 Identities = 366/516 (71%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||||||||||||| |||| | Sbjct 51325 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATC 51383 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | ||||||||||||| ||| Sbjct 51384 TGTCCAAGGATCTTCACG----ACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTC 51439 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||| ||||| || ||| ||| |||||| ||||| |||||||| Sbjct 51440 ATCTCTCACGTCCTGGCCTTCTT-CGCTGCCTCCGATGGAATCGTCAATGAGAACCTCAT 51498 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | |||||| || | || ||||| || | || ||||| ||||| || Sbjct 51499 TGAGCGCTTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAAAT 51558 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || ||||| ||||| ||||| || ||| ||| || Sbjct 51559 CATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACATACATCAGCGA 51618 Query 1456068 CCCGGTCGAG--AAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || | || | | || ||||||| ||||||||||| | || | | | || Sbjct 51619 GCC---CAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAA 51675 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||||| ||||||||| || ||||| | ||||| | |||||| ||||||| Sbjct 51676 GAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAA----CTCGAC-CTTTGCCTGC 51730 Query 1456182 CGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||| ||| |||||||| | ||||||||||||| ||||| || ||| ||| |||| Sbjct 51731 CGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTC-GCGTCCAT 51789 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||| | |||||||| || ||||||||||| || Sbjct 51790 CTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCT 51825 Score = 154 bits (170), Expect = 2e-31 Identities = 234/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||| ||||| ||||| | | | ||| ||||||||| || | | | | Sbjct 51864 TGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACAAGCCATCAAACCAGG 51923 Query 1456512 T-GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | ||| | |||||| ||||||||| | |||||| | |||||| ||| || | Sbjct 51924 TTGTTGAAG-ACATCATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACGCC 51982 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || |||||| |||| |||||||||| |||||||||||||||||| || || | Sbjct 51983 CTCCCATGTGCGCTCCTCGGAATGAACGCCAA-GCTCATGTGCCAGTACATCGAGTTC-G 52040 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 |||||||||| || ||| ||| |||||| | ||||||||||| | | ||||| Sbjct 52041 TCGCCGACCGTCTCCTCCTGGCACTCGGCAACC-AGAAGCACTACAACGCCACAAACCCC 52099 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT- 1456749 ||| | |||||| ||||| |||| ||||| |||||||| |||||| || || Sbjct 52100 TTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGTC 52159 Query 1456750 GGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||||| ||| |||||||| |||| Sbjct 52160 GGCGACTACCAAAAGGCCGGTGTCA 52184 >seq1589 Length=144912 Score = 109 bits (120), Expect = 8e-18 Identities = 206/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | ||||||| | ||| ||||| || |||| ||||| || | ||| Sbjct 46676 ACCTACAACTACATGTCGAACAAGTACTTCACACATGCTTCGCCTACGCTGTTCAGCGCC 46735 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | | ||| | || ||||| || | |||||||||| || || Sbjct 46736 GGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGCATT 46795 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| | ||| ||||| | ||||||||| || ||||||||| Sbjct 46796 GATGGCATCTACGACACCTTGAAGACCTGCGCCATGATCTCCAAGAACGCTGGCGGCATC 46855 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || ||| | ||||| | || || ||| | || || ||||| Sbjct 46856 GGACTCAACGTTCACCGCATCCGCGCGACTGGAGCATACATCAGCGGTACAAACGGAACA 46915 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| || || |||||||| || || |||||| |||| || ||||||||||||||| Sbjct 46916 TCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAG 46975 Query 260183 TGC 260185 || Sbjct 46976 GGC 46978 Score = 109 bits (120), Expect = 8e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | ||||||||||||||| ||||| |||||| Sbjct 47274 AGCTCTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCACGCCATACATCCTCTACA 47333 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||||| | |||| | ||||||||| ||||| |||| |||| | ||| ||||| Sbjct 47334 AGGACGCTGCCAACGGCAAGAGCAACCAGAAGAACTTGGGGACCATCCGCAG-CTCCAAC 47392 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || |||||||||||| || ||| Sbjct 47393 CTCTGCACCGAGATCATCGAGT 47414 Score = 102 bits (112), Expect = 1e-15 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGTTGC 262936 ||||||||||| |||||| ||| | | || | |||| || | ||||||||| | | Sbjct 47848 CTGGGACTGGGCCGCACTCAAGGCCAAGAT-CGCCGAGCACGGTGTTCGCAACTCGCTCC 47906 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 |||| || | |||||| || || | || ||||||||| |||| || |||| |||| Sbjct 47907 TCGTCGCTCCCATGCCGACTGCATCCACCTCGCAGATCATGGGTTTCAACGAGTGCTTCG 47966 Query 262997 AGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 || ||| ||| |||||||||||| | || || |||||| | ||||| || || ||| Sbjct 47967 AGC-CATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGCGAGTTCCAGGTTGTC 48025 Query 263056 AACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG 263097 |||| || ||||| | |||| | ||| ||||||||| Sbjct 48026 AACCCATGGTTGCTCAAGGACTTGGTTGAGCGTGGCCTGTGG 48067 >seq2752 Length=254214 Score = 107 bits (118), Expect = 3e-17 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 724908 TTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAG 724967 || |||| || || ||||||||||| ||||| || | | ||| |||||| Sbjct 205159 TTCATCTCCA--GTCCTCAAGCAGGTCCACCCTGATACTGGT-----ATC-TCCAACCGC 205210 Query 724968 TCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027 ||||||| ||| ||||||| || ||||||||||| |||| ||| ||| |||||||| Sbjct 205211 GCCATGTCCATCCTGAACTCCTTCGTCAACGACATCTTCGAGCGCGTCGCAACCGAGGCT 205270 Query 725028 GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 || ||| | ||||||| || ||| | | ||||| ||||| ||| || Sbjct 205271 TCCAAGCTTGCGGCATACAACAAGAAGTCAACCATCTCCTCCCGCGAAATCCAAACCTCC 205330 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| | | ||| || ||||||| |||||| || ||||||||||||| Sbjct 205331 GTCCGACTCATCCTCCCCGGTGAGCTGGCCAAGCACGCTGTGTCCGAGGGCACCA 205385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177456932399026