Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1655 91.5 2e-13 >seq1655 Length=66175 Score = 91.5 bits (100), Expect = 2e-13 Identities = 287/442 (65%), Gaps = 16/442 (4%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| || || || || |||||||| || || ||||||||| | | || || || Sbjct 52173 TTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTC 52114 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| || || || || || || || || || | || | || | | | | Sbjct 52113 TCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGG 52054 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || || || || || ||||| ||| | | |||||||| | ||| Sbjct 52053 AGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGGAGC 51994 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | ||| || || || || |||||||| | |||||| | |||||||| || || Sbjct 51993 GCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGAT---- 51938 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTA--------AACATTAAGC 39617 ||||| || | || | || | | |||| | |||| | |||| | || Sbjct 51937 GATGT--CTTCAACAAC-CTGGTTTGATGGCTTGT-TGTTGAGGTGGGAGAACAGCAGGC 51882 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 |||||||||| || | |||||| || | || | ||||| || || ||||| | Sbjct 51881 AGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGC 51822 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 | ||||| ||||||||||| || | ||| || |||| || || ||||| || ||||||| Sbjct 51821 CGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGA 51762 Query 39738 TGCCTTCTACTGCTGCAAATGC 39759 |||| || | || ||||| || Sbjct 51761 TGCCCTCGATGGCGGCAAAGGC 51740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877262299720