Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1655 91.5 2e-13
>seq1655
Length=66175
Score = 91.5 bits (100), Expect = 2e-13
Identities = 287/442 (65%), Gaps = 16/442 (4%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|||||||| || || || || |||||||| || || ||||||||| | | || || ||
Sbjct 52173 TTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTC 52114
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| || || || || || || || || || | || | || | | | |
Sbjct 52113 TCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGG 52054
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | || || || || || ||||| ||| | | |||||||| | |||
Sbjct 52053 AGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGGAGC 51994
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
| ||| || || || || |||||||| | |||||| | |||||||| || ||
Sbjct 51993 GCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGAT---- 51938
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTA--------AACATTAAGC 39617
||||| || | || | || | | |||| | |||| | |||| | ||
Sbjct 51937 GATGT--CTTCAACAAC-CTGGTTTGATGGCTTGT-TGTTGAGGTGGGAGAACAGCAGGC 51882
Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677
|||||||||| || | |||||| || | || | ||||| || || ||||| |
Sbjct 51881 AGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGC 51822
Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737
| ||||| ||||||||||| || | ||| || |||| || || ||||| || |||||||
Sbjct 51821 CGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGA 51762
Query 39738 TGCCTTCTACTGCTGCAAATGC 39759
|||| || | || ||||| ||
Sbjct 51761 TGCCCTCGATGGCGGCAAAGGC 51740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686877262299720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |