Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1655 183 4e-41 seq1589 141 1e-28 >seq1655 Length=66175 Score = 183 bits (202), Expect = 4e-41 Identities = 542/818 (66%), Gaps = 27/818 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| || || || | | | ||| ||||||||| Sbjct 52167 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTCTCCATA 52108 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAAT--CTGTTTGAGGAGA 129844 || || || ||||| | | ||| | | |||| | | | | | ||||||| Sbjct 52107 AAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAG---GAGGAGA 52051 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | |||| |||| ||||||| |||| || || |||||| |||| ||| | Sbjct 52050 CGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCA 51991 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 |||||||| ||||| || ||| ||| ||| ||| | || || || | |||| | Sbjct 51990 CATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGGCCTCGGTGATGATGTCT 51931 Query 129965 TGAA-----TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019 | || |||| | || | || | ||| | | ||| || ||| | Sbjct 51930 TCAACAACCTGGTTTGA-TGGCTTGT-TGTTGAGGTGGGA---GAACAGCAGGCAGGCGA 51876 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| | |||||||||||||||||||| || || |||||| || || |||| Sbjct 51875 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 51816 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| ||||||||||||||||| || | ||||| || ||||||||||| |||| Sbjct 51815 TGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCGGAGAAGAAGATGCCCT 51756 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACCAC 130198 | | || || || | |||||| ||||||| || | |||| | | ||| Sbjct 51755 CGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGG-TCGAGTTCTTGTCGGAGATCCAT 51697 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-G 130257 || |||||| | ||||| || ||| || |||| | | | ||| || | |||| | Sbjct 51696 CGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGG 51637 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 | | | | || || || || ||||||| |||| ||||| || ||||| ||| Sbjct 51636 TACGTGCGTTGCT-TGGGCTCGCTGATGTATGTATCGATGAGGAGGGAGTATGTCTCGGA 51578 Query 130318 ATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 130376 |||| | | ||| ||| || || ||||||| |||| || ||| ||||| | Sbjct 51577 GTGGATGTTCTCCATCATGATTTGGAAAC-CGTAGAAGCAGCGGGCCTCGGGGATCTGCA 51519 Query 130377 CCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 130435 |||| || | || | | | ||| |||||| || ||||||||||| |||| || Sbjct 51518 CCTC-TCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCATCGGAGGCAGCGAAG 51460 Query 130436 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGTCG 130492 || ||||||| | ||||| | || | ||||| ||| | ||||||||| Sbjct 51459 AAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTGAGGCGCTTGTTCCAGTCG 51400 Query 130493 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 | ||||||||| || ||||| | |||||| || ||||| Sbjct 51399 TGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCA 51362 >seq1589 Length=144912 Score = 141 bits (156), Expect = 1e-28 Identities = 921/1462 (63%), Gaps = 37/1462 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||| |||||||| ||| ||||| ||| || | ||||| Sbjct 47988 TAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGAAACCCATGATCTGCGAGGTGGAT 47929 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || |||||||| || | ||| || ||| || | ||| | || || || Sbjct 47928 GCAGTCGGCATGGGAGCGACGAGGAGCGAGTTGCGAACACCGTGCTCGGCGATCTTGGCC 47869 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTG----TCTCCCCCTGCCACATATCAAACTG 118357 ||||| ||| ||||||| || || | || || | ||| ||||| || |||| Sbjct 47868 TTGAGTGCGGCCCAGTCCCAGA-GATCAGTGGGAGTCACACCC---CACATGTCGTACTG 47813 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT---C 118414 || || | ||| | || || ||||| ||||||| ||||| || || || | Sbjct 47812 AAGCTCGCCCTTGGAAACGGGAGAGCCCTCGTATGTCTCGTATGGTCC---AAGCTTAGC 47756 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 || | ||| | || ||| || |||||||| || || || || || || || Sbjct 47755 AGCGAGATCGCATGAAGCGGTGAGAGCAGCGTGATAGATGGTCTCGAAGATCTGAATGTT 47696 Query 118475 CAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA--AATAAATACATCCGC 118531 | || | | |||| || || || | | || || | || ||| |||| || Sbjct 47695 GAGCTGGCGAG-CCTCAGGAGAGTCGAAAGGCATGCG-CAGAGCCAAGAAAG-CATCGGC 47639 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC 118591 ||||| | ||||||||| || || || || || | | || ||| ||||| ||| Sbjct 47638 AAGACCGTTGACACCGAGACCGATGGGACGGTGACGGAAGTTGCTCTTGCGAGCC-TCTG 47580 Query 118592 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 ||| || || || ||||| | | | || | || |||||||| | |||| Sbjct 47579 GCACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTTTGAGTGA 47520 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGG 118709 | || ||||| || | || |||| || || ||| | ||| || | || ||| Sbjct 47519 CCTGGTGGAGCTTGTCAAAGTCGAAAC-GCTCGTTCTCAATGTCGACGTAGGTGGGGAGG 47461 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 |||| || || || || ||||| | | |||||| | |||||||||| || || || Sbjct 47460 GCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCG 47401 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||| | ||| || || ||||| ||||||||||| || || ||| ||| Sbjct 47400 GTGCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGCA 47341 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| || ||||||||||| || ||||| || || | || ||| || || | | Sbjct 47340 GCGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTAC 47281 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | ||| | || || | | ||||| |||||| ||| Sbjct 47280 CAGAGCTTCTG-AGCGCGGACTGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTA 47222 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | || ||||| | || | | || | || || || || | ||||| | Sbjct 47221 CAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACAT 47162 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 | || ||| || |||||| ||||||||||| || || || | |||||| | Sbjct 47161 CAAAGTCCAAGTGGTGTTCTGCTCAACACGCTTCATGAACAGATCAGGCACCCAGAGACC 47102 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | ||| || ||| | || || | || || || || | ||||| || Sbjct 47101 GTAGAACAAATCGCGGGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAA 47042 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185 | | || ||| |||||||| || || | ||||| |||| | || | | || Sbjct 47041 GGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCACC---AGGTCGCTT 46985 Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 || |||||| || || | || ||| |||||| ||||| ||||| || | || Sbjct 46984 GTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAG 46925 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| | |||| || ||||| || | || | | | || | || ||| | Sbjct 46924 ACCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGCGGATGCGGTGAAC 46865 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || | || || || || || ||| ||||| ||||| | | | || |||| Sbjct 46864 GTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTCGTA 46805 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| ||||| || |||| |||| | |||||||||||||| | || |||| | Sbjct 46804 GATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTT 46745 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 |||||| || ||| |||| || || || | || || |||| ||| | | ||||| | Sbjct 46744 GGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAA-GTACTTGTTCGACATGT 46686 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || ||||||||| | | | | |||||| || ||||| || || | | || |||| Sbjct 46685 AGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAACACGCA 46626 Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 119601 | | ||| | ||| ||| | || | | || | || |||| | ||||| ||| Sbjct 46625 TGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGATCCTCAGAAGGTATGATCTCT 46566 Query 119602 CCAAGGTCTTGAGACCAAAATA 119623 ||| ||||||| ||||| || Sbjct 46565 CCAGCGTCTTGAATCCAAAGTA 46544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406806093880