Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1589 219 5e-52 seq3230 161 1e-34 seq2039 116 4e-21 seq2882 114 1e-20 seq2320 89.7 6e-13 >seq1589 Length=144912 Score = 219 bits (242), Expect = 5e-52 Identities = 803/1240 (65%), Gaps = 33/1240 (3%) Strand=Plus/Minus Query 80538 ACCCCACATGTCGTGCTGCAAGAT-GCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 |||||||||||||| ||| ||| | ||||| || | ||||| ||| || | ||||||| Sbjct 47830 ACCCCACATGTCGTACTG-AAGCTCGCCCTTGGAAACGGGAGAGCCCTCGTATGTCTCGT 47772 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | || || | | || || || || || | | || || |||||||| ||| || Sbjct 47771 ATGGTCCAAGCTTAGCAGCGAGATCGCATGAAGCGGTGAGAGCAGCGTGATAGATGGTCT 47712 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| |||| | ||| |||| || |||||| | || || || || Sbjct 47711 CGAAGATCTGAATGTTGAGCTGGCGAGCCTCAGGAGAGTCGAAAGGCATGCGCAGAGCCA 47652 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 ||| | || || || || | || |||| |||| || ||||| || ||| | || Sbjct 47651 AGAAAGCATCGGCAAGACCGTTGACACCGAGACCGATGGGACGGTGACGGAAGTT-GCTC 47593 Query 80777 GCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 || ||||| || | |||||| ||| ||||||| ||||| ||| || Sbjct 47592 TTGCGAGCCTCTGGCACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTG 47533 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCCCTTCACAA-- 80890 || | || || | || || || | ||||||||| | |||| | | | | Sbjct 47532 ACGGTTTGAGTGACCTGGTGGAGCTTGTCAAAGTCGAAACGCTCGTTCTCAATGTCGACG 47473 Query 80891 -ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 | | || ||| || || || || ||||||||||| ||||| |||| | | || || Sbjct 47472 TAGGTGGGGAGGGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTAC 47413 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||| ||| || ||||| | || || || || |||| ||| |||||||| | Sbjct 47412 TCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTC 47353 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| ||||| ||||||||||||| ||||| || || ||||||||| ||| | || | Sbjct 47352 TTGCCGTTGGCAGCGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCG 47293 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 |||||||||| ||| | || | || ||| || || ||||| || | | Sbjct 47292 AGGATGGCGTACCAGAGCTTCTGAGCGCGGACTGTCTCACGACCCTTGCCCTCACGCTCG 47233 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| ||| || ||||||| || |||| | |||| || | |||||||| Sbjct 47232 TATCGCTCGTACAGC-TCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTC 47174 Query 81189 GTTAGGGCACATC-AGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 || |||||||||| | || | ||| ||||| | ||| ||| ||||||||| |||| Sbjct 47173 GTGAGGGCACATCAAAGTCCAAGT-GGTGTTCTGCTCAACACGCTTCATGAACAGATCAG 47115 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 | | |||||| || ||||| |||||| || ||||||| | || ||||| || Sbjct 47114 GCACCCAGAGACCGTAGAACAAATCGCGGGCACGAACCTCCTCCTTTCCGTGGTTCTTGC 47055 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366 | | || | ||| | || || || ||||||||||| | |||| ||||| | || Sbjct 47054 GGAGATCCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCAC 46995 Query 81367 -----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCA 81421 | |||| ||| ||||||| |||||| || || || |||||| ||||||| Sbjct 46994 CAGGTCGCTTG---TTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCA 46938 Query 81422 ACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481 ||| || | || ||| | || ||||| ||||| ||| | || | |||| Sbjct 46937 GCATGGGTACGAGACCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCGC 46878 Query 81482 GCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | | ||| ||| ||| || |||||||| || | ||| || ||| || || Sbjct 46877 GGA---TGCGGTGAACGTTG--AGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCA 46823 Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596 |||| ||| || || || || || ||||| || | |||||||| | | ||| || Sbjct 46822 GGTCTTCAAGGTGTCGTAGATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCA 46763 Query 81597 GCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | || || ||||| | | || ||||| ||||||| || || | || || |||| Sbjct 46762 GGATGCCAGCTGAGCGTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAA 46703 Query 81657 ATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAAT 81716 || ||| ||||| || ||||| || || | ||| || |||||||| || Sbjct 46702 GTACTTGTTCGACATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGAT 46643 Query 81717 ACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 || | ||| |||||||| | ||| | || || ||||| Sbjct 46642 GCCAACAGCAACACGCATGATCATCTGTTGTGGTCTCTCG 46603 >seq3230 Length=199858 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || | ||||| ||||| Sbjct 170329 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 170388 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || ||||| Sbjct 170389 GACACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 170448 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||||||||| || | ||| || || | ||||| || Sbjct 170449 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACAAC 170508 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| ||||| ||| | || ||||| ||||| Sbjct 170509 ATCCAGAAGGAATCGACTCTCCATCTCGTCCTCCGCCTTCGTGGTGG 170555 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| |||| ||| | ||| ||||| Sbjct 170125 ACTGGAAAGACCATCACGCTTGAGGTCGAGTCCTCGGATACCATCGACAATGTGAAGAGC 170184 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||||||||| |||||||||||||||||||| || || || || || ||| Sbjct 170185 AAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGAAAG 170244 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| || ||||| ||| ||||| || |||| ||||| |||||||| || Sbjct 170245 CAGCTTGAGGATGGGCGCACCCTCAGC-GACTACAACATCCAGAAGGAGTCCACTCTCCA 170303 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || || || ||||| Sbjct 170304 CTTGGTGCTCCGCCTCCGTGGTGG 170327 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||||||||| || || || || ||||| ||| Sbjct 170557 ATGCAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCA 170616 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || ||||| |||||||| ||||| || || || || Sbjct 170617 GACACGATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAA 170676 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | || || || Sbjct 170677 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAAC 170736 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || ||||| ||| || || | || | ||||| || || |||||| Sbjct 170737 ATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGACAA 170787 >seq2039 Length=622076 Score = 116 bits (128), Expect = 4e-21 Identities = 298/449 (66%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| |||||||| || | ||||| ||||| || ||||||||||| || || Sbjct 530057 CATGCGATCCATTCCCTCTGTCGTTGACGGTCTCAAACCAGGTCAGCGCAAGGTAATGTA 529998 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | | || || ||||||| || ||| | ||||||| | |||| | |||| || Sbjct 529997 CACTTGTTTCCGACGGAACCTGAAGAAAGACGTCAAGGTGGTGGAGCTTGCTGGCTCGGT 529938 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || || || || |||| || |||| || ||| || || || || Sbjct 529937 CTCAGGGCTGACAGCATACTCGTACGGGGAAACGTCACTGCAGCAGACTATCGTTGGTCT 529878 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 ||||||| ||||||||| |||| ||| | ||| | ||||| || || || ||| | Sbjct 529877 GGCTCAGACTTTTGTCGGTTCAAACAACATCAACATTCTCGAACCCAGCGG-CAATTTCG 529819 Query 32199 GACCCGGCTCGC-CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC----CCGT 32253 | | | | || ||||| | || ||||| ||| | |||||||||| ||| | || Sbjct 529818 GTTCTCGATTGCAGGGTGGAAGCGACGCTGCCAGCGCACGTTACATCTACACGAGACTGT 529759 Query 32254 CTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAAT 32313 ||| |||| | | || | | | ||| | | | | ||||| ||| || | | |||||| Sbjct 529758 CTC---CCTTTG-CCCGAAGGCTCTTCCATCAGACCGACGAGGCGTTGTTGACCTACAAT 529703 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 ||||||||| || | ||||||| | | | |||| ||| | |||| |||||| | Sbjct 529702 ACTGATGACGGCAAGACGATCGAGCCCGAGATGTACATCCCGATCGTTCCCATGATCCTC 529643 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||||| || || || || || ||||| Sbjct 529642 ATCAACGGCGCTGATGGTATTGGTACGGG 529614 >seq2882 Length=147932 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 6766 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 6707 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| || || ||||| ||||||||||| || || ||||| ||||| | Sbjct 6706 GACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 6647 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||||| || ||||| ||| ||||| || ||||||| Sbjct 6646 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGC-GACTACAACATCCAAAA 6588 Query 27594 GG 27595 || Sbjct 6587 GG 6586 >seq2320 Length=314285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || || || || ||||| ||||| || || || || || |||||||||||| Sbjct 232792 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 232733 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| || || || || | ||| | Sbjct 232732 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 232673 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 232672 CGCCTCCGTGGTGG 232659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284215623760