Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 122 5e-23
seq2320 84.2 1e-11
>seq3230
Length=199858
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || ||||||||||| |||||||| ||||| |||||||| ||
Sbjct 170774 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGG 170715
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || ||||| || || | |||||||| ||||| || | ||| |||
Sbjct 170714 CCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATTCCTTCC 170655
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | || ||| | || |||||| || ||||||| ||
Sbjct 170654 TTGTCT-TGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACTTCCAGTGT 170596
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || ||||| | || || || || || |||||
Sbjct 170595 GATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | || | ||||||||| ||||| || ||||| || || ||
Sbjct 170555 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAG 170496
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||| ||||| || ||||| || || || |||||||||||||| ||
Sbjct 170495 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGA 170436
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | ||||| | || ||||| ||||||
Sbjct 170435 ATGCCCTCCTTGTCCTGGATC-TTCGACTTAACATTGTCGATGGTGTCCGACGACTCCAC 170377
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| ||||| || ||||| | || || || || ||||||||
Sbjct 170376 CTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329
>seq2320
Length=314285
Score = 84.2 bits (92), Expect = 1e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| || |||||| || ||||| || || ||||| || || | || ||
Sbjct 232677 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 232736
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616
||||| || ||||| || || | |||||||||||||| || | || |||||||||||
Sbjct 232737 AGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTCTGT 232795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314715511227809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |