Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 154 3e-32
seq2882 134 3e-26
seq2320 102 2e-16
>seq3230
Length=199858
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| || ||| ||| || || ||||| ||||| | |||
Sbjct 170781 TCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAG 170722
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|||| || || || ||||||||||| |||||||| ||||| ||||| || || || |
Sbjct 170721 TGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGAT 170662
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||||||| || ||||| || ||||| ||||| ||||| || |||||| ||
Sbjct 170661 TCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACTTC 170602
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| || ||||| ||||| || || | |||||
Sbjct 170601 CAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || ||||| || || || |||||||| || || | || ||
Sbjct 170550 ACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGT 170491
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||| || |||||||| |||||||| | || |||||||| || |||| ||
Sbjct 170490 GCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCC 170431
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| || || ||||| |
Sbjct 170430 CTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCACCTCCAA 170371
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||| || ||||| ||||| || || | ||||||
Sbjct 170370 GGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||||||||| || |||||||| || || ||||| | |||||
Sbjct 170312 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 170253
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| ||||||| || ||||||||
Sbjct 170252 TCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 170193
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || |||||||| || ||| || ||||| || ||||| |||
Sbjct 170192 TGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTC 170133
Query 211083 TTTCCCGT 211090
||||| ||
Sbjct 170132 TTTCCAGT 170125
>seq2882
Length=147932
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || ||||| | ||||| || || ||||| || ||||||||
Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || |||||||| || || | ||| ||||| ||||||||||| || ||||| |||
Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCG 6707
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| || || |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct 6708 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766
>seq2320
Length=314285
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || || ||||| || |||||||| || || | |||||| | |||||
Sbjct 232674 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 232733
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| || |||||||| |||||||| ||||| |||||||| || || | |||||||||||
Sbjct 232734 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 232792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159097449944645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |