Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3230 152 1e-31 seq2882 111 4e-19 seq2320 86.0 1e-11 >seq3230 Length=199858 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || |||||||| ||||| || |||| ||||| |||| | || Sbjct 170550 ACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGT 170491 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || |||||||| | ||| |||||||| || ||||| || Sbjct 170490 GCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCC 170431 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || || Sbjct 170430 CTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCACCTCCAA 170371 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | ||||| Sbjct 170370 GGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||| ||| | || | |||||| Sbjct 170312 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 170253 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| || ||||||||| Sbjct 170252 TCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 170193 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| |||||||| || |||| || || || | |||||| ||| Sbjct 170192 TGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTC 170133 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 170132 TTTCCAGTCA 170123 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||| || || || | |||||||| | | || | || || Sbjct 170768 AGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCC 170709 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| || || || || |||||||||||| Sbjct 170708 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATTCCTTCCTTGTCT 170649 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| |||||||| | ||| || || | ||||||||| Sbjct 170648 TGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACTTCCAGTGTGATCGTC 170589 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 170588 TTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 >seq2882 Length=147932 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| ||| || |||| ||||| || || ||||| || |||||||| Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| || || || || ||||| || |||||||| ||| || ||| Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCG 6707 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| || | ||||| || | ||||| ||||||||||| Sbjct 6708 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 6751 >seq2320 Length=314285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| | || | ||||| Sbjct 232674 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 232733 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || |||||||| || || || |||||||||||| Sbjct 232734 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTCT 232793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192475079109062