Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3230 105 2e-17 seq2882 96.9 8e-15 >seq3230 Length=199858 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||| || || || ||||||||||| |||| | || | || || Sbjct 170541 GAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTC 170482 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| | | ||| ||||||| | || || ||||| || Sbjct 170481 TTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 170422 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| | || | | |||| || ||| || || | || || || Sbjct 170421 CTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGT 170362 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| |||||| Sbjct 170361 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || || ||||||||||| | | || | || || || || || |||||||| Sbjct 170748 CTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 170689 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||| || |||| | |||||||||||| |||||||| || ||||| | Sbjct 170688 GATGAGGCGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTT 170629 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | ||||||| || ||||| || || || || ||||| ||||| ||||| || Sbjct 170628 GTCGATCGTGTCTGATGATTCAACTTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGAC 170569 Query 152093 GAAGACCTGCAT 152104 ||| | ||||| Sbjct 170568 GAATATTTGCAT 170557 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| || ||||||||||| ||| | || | Sbjct 170319 GAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCG 170260 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||| || || ||||| ||||||||||| || | ||||||||| | | || || Sbjct 170259 CCCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCC 170202 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || || ||| | || | | | || || ||| || ||||| Sbjct 170201 TCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGC 170142 Query 152064 GTAATAGTTTTGCCCGT 152080 || || || || || || Sbjct 170141 GTGATGGTCTTTCCAGT 170125 >seq2882 Length=147932 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 |||||||||||||| ||| | |||| ||||| || || ||||| |||||||||| Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTT--CCGGCGAAGA 6645 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||| ||||||| | |||||| ||||| || || || || ||||| | | Sbjct 6646 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGT 6705 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | |||| || ||| || || || || || || ||||||||||| ||||| |||| Sbjct 6706 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 6765 Query 152095 A 152095 | Sbjct 6766 A 6766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153766500832583