Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 172 1e-37
seq2882 141 2e-28
seq1655 120 6e-22
seq2320 105 1e-17
>seq3230
Length=199858
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | || ||| || |||||||||||||| |
Sbjct 170556 ACCACCACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 170497
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||||| || || || ||||| || ||||| |||||||| || |||||||| ||
Sbjct 170496 GAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGG 170437
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | ||||| |||||||| | || ||
Sbjct 170436 AATGCCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCAC 170377
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||||||||| || || | ||||| ||||| ||||||||
Sbjct 170376 CTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||| || || |||| || | ||||| || || || |||||||| |||| |
Sbjct 170783 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 170724
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || ||||| ||||| | || ||||| || ||
Sbjct 170723 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170664
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||||||||| ||||| | || ||| | ||||| ||||| || | ||| |||
Sbjct 170663 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACT 170604
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| || || | ||||| |||||||| |||||
Sbjct 170603 TCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
Score = 132 bits (146), Expect = 1e-25
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || ||||||||||||||
Sbjct 170328 ACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 170269
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 170268 GAGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 170209
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| |||||||||||||| ||| ||||| || || | ||||| || ||||| | ||||
Sbjct 170208 AATGCCCTCCTTGTCTTGAATC-TTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGA 170150
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
| || || ||||| ||||| || ||||
Sbjct 170149 CCTCAAGCGTGATGGTCTTTCCAGTCA 170123
>seq2882
Length=147932
Score = 141 bits (156), Expect = 2e-28
Identities = 141/180 (78%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||||||||| || || ||||||||||| ||||| || ||||| ||||||
Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
|| || |||||||| || || |||||||| || |||||| ||||| || ||| | ||
Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATC-TTGCTCTTGACGTTGTC 6706
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| || | || || ||||| ||||| ||||| ||||| | ||||| |||||
Sbjct 6707 GATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766
>seq1655
Length=66175
Score = 120 bits (132), Expect = 6e-22
Identities = 137/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286
|||| ||||| || | |||||| | || || ||||| ||||| || || ||| | ||
Sbjct 51999 TCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCC 52058
Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346
|||| || || || |||| || ||| ||| |||||||||| ||||||||| ||
Sbjct 52059 TGGCACTCGGCAACCAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGAACA 52118
Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406
| || ||| || ||||| ||||||||||| ||||||||| |||| || |||| | |||
Sbjct 52119 TCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAAAAGGCCG 52178
Query 230407 GTGT 230410
||||
Sbjct 52179 GTGT 52182
>seq2320
Length=314285
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || |||||||||||||| |
Sbjct 232658 ACCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 232717
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| ||||| || ||||| ||||||| || |||||||| ||
Sbjct 232718 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 232777
Query 282992 AATACCCTCCTTGTCT 283007
|| || |||||||||
Sbjct 232778 GATGCCTTCCTTGTCT 232793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046689940126142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |