Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2882 149 2e-30
seq3230 145 2e-29
seq2320 87.8 4e-12
>seq2882
Length=147932
Score = 149 bits (164), Expect = 2e-30
Identities = 141/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || ||||| || || || ||||||||||||||||| || ||||||||
Sbjct 6767 TTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCAT 6708
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| ||||| || || |||||||| |||||||| || ||| |
Sbjct 6707 CGACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATT 6648
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || ||||| ||||| | || || ||| || ||| |||||||
Sbjct 6647 GATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAA 6588
>seq3230
Length=199858
Score = 145 bits (160), Expect = 2e-29
Identities = 145/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || |||||||| || || || ||| ||||||
Sbjct 170560 CAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCAGAC 170619
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| |||||||| ||||| ||||||||||| ||||| || ||
Sbjct 170620 ACGATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAACAG 170679
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || |||| ||| | ||||| ||| |
Sbjct 170680 CGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAACATT 170739
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 170740 CAGAAGGA 170747
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||||||| | |||||||| || |||
Sbjct 170332 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCGGAC 170391
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || || || |||||||| ||
Sbjct 170392 ACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAG 170451
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||| || || |||||||| || | || || |||| || ||| ||
Sbjct 170452 CGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACAACATC 170511
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 170512 CAGAAGGAATCGACTCTCCATCTCGT 170537
Score = 116 bits (128), Expect = 9e-21
Identities = 137/184 (74%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || ||||| || ||||| || ||| || |||||||| || || ||
Sbjct 170125 ACTGGAAAGACCATCACGCTTGAGGTCGAGTCCTCGGATACCATCGACAATGTGAAGAGC 170184
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||| ||||| || || || ||||| |||||||| || || ||||||||||||||
Sbjct 170185 AAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGAAAG 170244
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || ||| || ||| |||| || || || || || ||
Sbjct 170245 CAGCTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCA- 170303
Query 178125 CTTG 178128
||||
Sbjct 170304 CTTG 170307
>seq2320
Length=314285
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/115 (77%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| ||||| ||||| |||||||| || || || ||||||||||| || || |||||
Sbjct 232792 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 232733
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | || ||| |||| || ||| |||| || || || || || || ||||
Sbjct 232732 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA-CTTG 232679
Score = 84.2 bits (92), Expect = 5e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || ||||||||||||||||||||| || |||
Sbjct 232962 CAGATCTTCGTGAAGACCCTAACGGGCAAGACGATCACCCTCGAGGTGGAATCGTCCGAC 232903
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014
|||||||| || ||||| ||||||||||
Sbjct 232902 ACCATCGACAATGTCAAGTCCAAGATTCAGG 232872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203674552033562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |