Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3230 161 9e-35 seq2320 111 1e-19 seq2882 104 2e-17 >seq3230 Length=199858 Score = 161 bits (178), Expect = 9e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||| ||||| ||||||||| Sbjct 170555 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAG 170496 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| |||| ||||||||||||| |||| Sbjct 170495 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGA 170436 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| ||||||||| Sbjct 170435 ATGCCCTCCTTGTCCTGGATCTTCGACTT-AACATTGTCGATGGTGTCCGACGACTCCAC 170377 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 170376 CTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| |||||||||||||||||||| || || || Sbjct 170783 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 170724 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||||||||| || ||||||||||| |||| || Sbjct 170723 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170664 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || | | ||| | | | ||||| || || || Sbjct 170663 ATTCCTTCCTTGT-CTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAAC 170605 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 170604 TTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 >seq2320 Length=314285 Score = 111 bits (122), Expect = 1e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| |||||||| | || ||||| |||||||||||||| Sbjct 232694 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 232753 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 ||||||||||||||||||| || | || |||||||| Sbjct 232754 GATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 232792 >seq2882 Length=147932 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 ||| | |||| || ||||| |||||| ||||| || | || ||||| ||||| |||| Sbjct 6580 TGCGCACCTTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGG 6639 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 |||| |||| ||||||||||||| || | | |||||| ||| ||| || ||| Sbjct 6640 CGAAGATCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTT-G 6698 Query 41787 ACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTC 41845 ||| | | | |||||| |||||||||||| | || || || || ||||| || ||| Sbjct 6699 ACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 6758 Query 41846 TTTACGAAA 41854 || |||||| Sbjct 6759 TTGACGAAA 6767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282774467600