Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq407 381 6e-101 seq5787 129 6e-25 seq360 105 7e-18 seq351 95.1 1e-14 >seq407 Length=91491 Score = 381 bits (422), Expect = 6e-101 Identities = 576/804 (72%), Gaps = 15/804 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||||||| | || || Sbjct 18288 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 18347 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| | |||||| |||||||| |||||| Sbjct 18348 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGACGACGAGCGCTTCTTCATCTCC 18407 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||| ||||| || || ||||||||||||||||| || ||||||| Sbjct 18408 CACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCGC 18467 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || ||||| | ||||||| || |||||||||||||| |||||| || Sbjct 18468 TTCAGCGGA-GAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 18526 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | ||||| || | || || |||||||||||| ||| | || | | Sbjct 18527 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAA 18586 Query 116932 GGAGAAGCTCCGT--TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | | | || ||| | || ||||||||||| | || || ||| || ||||||| Sbjct 18587 GCA-ACGC-ACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCT 18644 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||||||||| |||||| ||| || | || |||| | | || || | ||| Sbjct 18645 GACTGGGCGCTGCGGTGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCC 18704 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||| | ||||| ||||||| || || |||||| | || || ||| | ||| Sbjct 18705 TTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGGTTGAAG 18764 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||||||||| || ||| |||||||||||||||| | |||||||| Sbjct 18765 AAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 18824 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| |||||||||||| |||||||| || | || | | | | | | Sbjct 18825 ATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCACCT-CAACAACAAGCCATCAAACCA 18883 Query 117230 CG-CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | ||| || ||| ||||||| || |||| |||||||||| |||||||| || || Sbjct 18884 AGTCGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGC 18943 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || ||||| || || ||| | || || || | |||| ||||||||||||||| Sbjct 18944 CCTCCCATGTGCG-CTCCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACATCGAGTTC 19001 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | || || || | || | | | |||||||||||| | ||||||| Sbjct 19002 GTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCTACCAACCCC 19061 Query 117407 CTGGACTTTATGAACCTCATCTCC 117430 | ||||| ||| | ||||||| Sbjct 19062 TTCGACTTCATGGAGAACATCTCC 19085 >seq5787 Length=111344 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| | || || || | | Sbjct 90734 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCTTCG 90793 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| | ||||| Sbjct 90794 GACACCATCGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 90852 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| ||| ||||| || || || |||| ||||| ||| |||||||| Sbjct 90853 ACAGCGATTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCTCGGACTACAA 90912 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | ||||| ||||| || Sbjct 90913 CATCCAGAAGGAGTCGACGCTCCATCTCGT 90942 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| || ||||||| |||||| || ||||| || Sbjct 90599 GACAAGGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTCGCGGGAAAGCAGCTTGAG 90658 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||||| |||||||||||| ||||||||| |||| || || | ||| || Sbjct 90659 GATGGGCGCACCCTCAGCGACTACAACATTCAGAAGGAGTCCACTCTCCACTTGGTGCTG 90718 Query 40903 CGC 40905 ||| Sbjct 90719 CGC 90721 >seq360 Length=110533 Score = 105 bits (116), Expect = 7e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || |||||| |||| || || | |||||| | | Sbjct 36923 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 36864 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || |||| || || ||||| ||||| ||||||| || ||| | Sbjct 36863 GACAACG-TCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATT 36805 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || || || || || | || || | | |||||||||||||||||| Sbjct 36804 GATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTTTGAGCGACTACAACATCCAGAA 36745 Query 40878 GG 40879 || Sbjct 36744 GG 36743 >seq351 Length=85052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || ||||||| || || || |||| ||| ||||| ||||| || Sbjct 50308 GACAAGGAAGGCATTCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 50367 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || |||||| |||||||||||||||||||||| | || || || Sbjct 50368 GACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 50417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180107743200