Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq407 194 3e-44 seq5787 178 2e-39 seq360 120 6e-22 seq351 113 8e-20 seq601 93.3 8e-14 >seq407 Length=91491 Score = 194 bits (214), Expect = 3e-44 Identities = 573/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || |||||||||||||| |||||| | Sbjct 19148 CATGACACCGGCCTTTTGGTAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCC 19089 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||| |||||||||||| |||||||| ||| | ||||| ||| || Sbjct 19088 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTGCC 19029 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 |||||| || | ||||| || |||||||||||||| |||| ||| || | | ||| Sbjct 19028 GAGTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTT 18969 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| || | | ||| || |||| |||||| | ||| |||| ||| || |||| | Sbjct 18968 CATTCCGAGGA-GCGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAG 18910 Query 10174 CTTCCTCGACGATGCTCTTTACCACGTCAAGG---GACAGCTTGTTCTCGAGCTTCGAAT 10230 ||||| |||| | | | | ||| | || || ||||||| | ||| | || Sbjct 18909 ---CCTCGGTGATGATGTCTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGAGA 18853 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 |||| || |||| | ||| | ||||||||| ||| ||||| ||||||||| | Sbjct 18852 ACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGA 18793 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | || ||||||||||| || || || || |||||| || | ||| || |||| Sbjct 18792 AGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATCGATGCGAAAGATCCGG 18733 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTCG 10409 |||| | | |||||| | | | |||||| ||| || || |||| | | || Sbjct 18732 AGAAGAAGATACCCTCAATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTCT 18673 Query 10410 CG-CGAAAAGTATTTCG-AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 | || | | | || || ||||| | |||||||| | | | ||||| | ||| Sbjct 18672 TGTCGGAGA-TCCACCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCG 18614 Query 10467 ATAGCCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAG 10522 || || | |||||| | || ||| || |||| || | || | | || | ||| Sbjct 18613 ATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCG--CTGATGTATGTG--TCGATGAG 18558 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582 ||||||||| |||| ||||| | |||| | |||| | ||||||| || Sbjct 18557 GAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCG 18498 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| ||||| || ||| | | | |||||||| | || ||||| Sbjct 18497 GGCCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCC 18438 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702 ||| | || |||||| | |||| ||| ||||||| |||||| || ||||| || Sbjct 18437 ATCCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAG 18378 Query 10703 ----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 || || |||||| | ||||| | ||| | || |||||| ||||||||| Sbjct 18377 ACGCTTGTT----CCAGTCGTGAAGATCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGA 18322 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | ||| ||||||| |||||||| || Sbjct 18321 AGGAGGCCTCGGCCTTTTTGTACATTTG 18294 >seq5787 Length=111344 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||||||| || ||| ||| || || ||||| ||||| || Sbjct 91189 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 91130 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||| || || || | |||||| |||||||| ||||| | ||||| || ||||| Sbjct 91129 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 91070 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||||||||||||||| | ||| ||| ||||| ||||||| ||| || || Sbjct 91069 GATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 91010 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 91009 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 90962 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || ||||| ||||| || |||||||| || || ||| Sbjct 90960 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 90901 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || | || |||||||| || ||| Sbjct 90900 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 90841 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 90840 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 90781 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||| ||||||||||| |||||||| Sbjct 90780 TCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || || ||||| || ||| | Sbjct 90732 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 90673 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 90672 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 90613 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| ||| || |||||||| || | || || || Sbjct 90612 ATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 90553 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || ||||| || Sbjct 90552 TCAAGGGTGATTGTCTTTCCAGT 90530 >seq360 Length=110533 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| | || | ||||| || | ||||| |||||||| || Sbjct 36745 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 36804 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| ||||| || || ||||| || |||||||| ||||||| ||| Sbjct 36805 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGTCG 36864 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || |||||||||||||| ||||| Sbjct 36865 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 36923 >seq351 Length=85052 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || |||||| Sbjct 50441 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 50382 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | |||||||| |||||| Sbjct 50381 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 50322 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 50321 ATGCCTTCCTTGTCT 50307 >seq601 Length=45822 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || ||||| || | |||||||||||| ||| | |||| ||| |||| | || | Sbjct 15517 GGCGTAACGCCATTGCAGGTACTGGTTGGGAGTCTTCTCCATGTGCATCTCGACGTGCTC 15576 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | |||||||| | |||| | || |||| ||||||||||||| || |||| | Sbjct 15577 CAGGGCATGCTGCTTGATGTACCCGATACGCAAGTTGGGATGCTTCTCGACTTTGCCCTG 15636 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 ||| | ||||||||||||||| ||||| || || | ||| || || || ||||| Sbjct 15637 CTGCGGCACGGTCTCGCCGGTGAGGACTTTGATCAGAGTTGACTTTCCGGCTCCGTTGGG 15696 Query 225154 GCCAAT 225159 || || Sbjct 15697 TCCGAT 15702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921552471900400