Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq407 372 6e-98 seq339 269 5e-67 >seq407 Length=91491 Score = 372 bits (412), Expect = 6e-98 Identities = 603/853 (71%), Gaps = 16/853 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || |||| |||||||||||||||||| || || Sbjct 18288 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 18347 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 ||||||| || |||| | | |||| | |||| || || ||| || Sbjct 18348 TCCAAGGATCTTCACGACTGGAACAAGC-GTCTCAACGACGACGAGCGCTTCTTCATCTC 18406 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | |||||||||||||| || || || ||||| ||||| |||||||| | | Sbjct 18407 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 18466 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||| ||||| | ||||| ||||||||||||||||||||||| || Sbjct 18467 CTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 18526 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| |||||| || ||| Sbjct 18527 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAA 18586 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | || ||||| ||||| || | || || |||||| |||||||| || Sbjct 18587 GCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGA 18646 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||||||| |||||| | | || | | || || | | | || | |||| Sbjct 18647 CTGGGCGCTGCGGTGGATCTCC-GACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCT 18705 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || ||||| | ||||| ||||||||||| || | ||||| || ||||||||| | ||| Sbjct 18706 TTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGGTTGAAGA 18765 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || |||||||| ||||||||||| ||||| |||||| | | |||||||| Sbjct 18766 AGCGTGGTCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 18824 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 |||| | |||||||||||||| |||||||| ||||||| ||||||| || || Sbjct 18825 ATGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCACCTCAACAACAAGCCATCAAAC 18881 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 | || | ||||||||| ||||| || | |||||| ||||||||||||| | Sbjct 18882 CAAGTCGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGAC 18941 Query 42954 TCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 | || ||| ||| | || |||| |||||| | | ||||||||| | |||||| ||| Sbjct 18942 GCCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTT 19000 Query 43013 CGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||||||||||| |||||| || || || ||| | | ||||||| | | || Sbjct 19001 CGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAG-CACTACAACGCTACCAACC 19059 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 |||||||||| |||||||||||||| | | |||||||||||||| ||||||||||| | Sbjct 19060 CCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTG 19119 Query 43132 TCGCCGACTACCA 43144 ||| || ||||| Sbjct 19120 TCGGTGATTACCA 19132 >seq339 Length=67822 Score = 269 bits (298), Expect = 5e-67 Identities = 1034/1601 (65%), Gaps = 82/1601 (5%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || || ||||| ||||||| || || Sbjct 52068 GTTGACAACCTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGG 52009 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| | ||| || ||||| ||||||| ||| |||||| |||||||| | || Sbjct 52008 CTCGAAACACTCGTTGAAGCCCATGATCTGCGAGGTGGACGCAGTTGGCATGGGAGCGAC 51949 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 || || ||| | || || ||| || | ||| | |||| || |||||||| Sbjct 51948 GAGGAGCGAGTTGCGGACACCATGC-TCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 51890 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | ||| || | | | ||||||||||| | || ||| |||||| Sbjct 51889 A---------GAGATCAGTAGGAGTCACACCCCACATGTCGTATTGGAGCTCGCCCTTGG 51839 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG--GCCAGCTTACAGCT 244386 ||||||| |||||||| ||| ||| || || || ||| || || | || Sbjct 51838 AGACGGGGGACCCCTCGTATGTCTCGTATGGTCCAA-GCT-TGGCAGCGAGATCGCATGA 51781 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || ||| || |||| ||||||||||||||||||| |||| | | ||| |||| Sbjct 51780 GGCGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTGGCGAGCCT- 51722 Query 244447 GCCGCAG-GTGAAGGGG-ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || || || || |||| || || ||| | || || || || | || || Sbjct 51721 -CAGGAGAGTCAAAAGGCATGCGCAGAGCCAAGAAAGCATCAGCAAGACCGTTGACACCA 51663 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAG 244561 | |||||||| | ||| || |||| | | || ||||| ||||||||||| | Sbjct 51662 AGACCGATGGGACGGTGACGGAAGTTG---CTCTTGCGAGCTTCTGGCACGGGGTAGTGG 51606 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 ||| | ||||| | |||||| | ||| ||||| | || ||| | | ||| | Sbjct 51605 TTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGGGTGACCTGGTGGAGCTTC 51546 Query 244622 TGAAAGTCGTA---CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 | |||||| | ||||| | ||| || ||| | ||| Sbjct 51545 TCGAAGTCGAAACGCTCGTTCTCAATGTCGACGTATGTGGGC---------------AGG 51501 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 |||| || |||||||| ||||| ||||| || | ||||||| || ||||||| Sbjct 51500 GCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCG 51441 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 |||||||| || || |||||| |||| || || || ||| |||| |||| Sbjct 51440 GTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCA 51381 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 |||||||||||||| ||| | || ||||||||| || || |||||| | | | Sbjct 51380 GCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATAC 51321 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 ||||| | | ||| ||| ||| ||| |||||||||| |||||| || |||| Sbjct 51320 CAGAGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTAC 51261 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || |||||||||| | ||| |||| || | || ||||||||| |||||||| Sbjct 51260 AGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATC 51201 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 | | |||| | | || || | || ||||||||| || |||| ||| || | Sbjct 51200 AAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCG 51141 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 | ||| || || | | | ||| ||| || |||||| | || ||||| ||| Sbjct 51140 TAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAG 51081 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 ||||| || ||||||| ||||| ||||| | || | || || || ||||||||| Sbjct 51080 GAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTGTTG 51021 Query 245159 CCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTAT 245214 || |||||||| | | | |||||| ||| || | ||||| | || || | Sbjct 51020 CCGCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAG 50965 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||||||||| ||||||| || || |||| | | | ||| Sbjct 50964 ACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGC----GCGAATTCTG- 50910 Query 245274 TGGACAT---GCCTAGT-CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329 ||||| | ||| | | || ||||||| ||||||||| | ||||||| |||| | ||| Sbjct 50909 TGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTG 50850 Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 || || || || |||||||| ||||||| || || |||||||| | ||| || Sbjct 50849 TCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGA 50790 Query 245390 GGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAG 245449 | ||||| | | | | ||||||| || || || || || ||||| | |||| Sbjct 50789 GCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGAC 50730 Query 245450 AGGAACCCGTACGTCTGGA--GCAGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCG 245506 | | | ||| |||| | || || ||||||| ||||||||||| | | || | Sbjct 50729 ATGTAGTTGTAGGTCTCAATGGCGGA--CTCGATGTCCTCGCCGTGGATGCCGACGGCCA 50672 Query 245507 CACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGAGC------ 245560 || | ||||| | || || || |||| || ||| | || |||| | Sbjct 50671 CA-CGCATGATCATCTGTTGTGGTCTCTC---GGCAACCTTG---CCGTTGATCCTCAAA 50619 Query 245561 ATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGC 245620 | ||| || | ||| ||||||||||| |||||||| |||| ||||| || || Sbjct 50618 AGGTATGACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAA 50559 Query 245621 CTGACGGCTGCGTCGAGTCTC-TCGGCGTGCTTC-TGACTG 245659 || ||| || ||| ||| || ||||||||| |||||| Sbjct 50558 ACGATGGCGCTGTTGAG-CTCGTCCGCGTGCTTCATGACTG 50519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944267548263200