Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq407 147 2e-30 seq360 104 2e-17 seq5787 98.7 1e-15 seq351 87.8 2e-12 >seq407 Length=91491 Score = 147 bits (162), Expect = 2e-30 Identities = 499/761 (66%), Gaps = 21/761 (3%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| |||||||||| || ||| ||||| |||| |||||||| || | ||| || Sbjct 18381 AACGACGACGAGCGCTTCTTCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGC 18440 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCA 52204 ||||| ||| |||||||||||| | | ||||||| | || | | |||||| | Sbjct 18441 ATCGTCAACGAGAACCTCATCGAGCGCTT-CAGCGGAGAAGTGCAAATCCCCGAGGCCCG 18499 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| ||| || || Sbjct 18500 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCT 18559 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACGAGCGCGACACG---CTGCTGAATGCGTTCGA 52321 ||| || || | | | || |||| | ||| |||| || | || || |||| Sbjct 18560 CATCGA-CACAT-ACATCAGC-GAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGA 18616 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 || | || ||| | || || |||||| | ||||| || ||||||| | | | Sbjct 18617 CAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAA 18676 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | |||| | ||| || | | ||||| ||| | ||||| | || || ||||| Sbjct 18677 CTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGG 18736 Query 52442 CAGCTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 | |||| || | ||||| | | || | | || | ||||||||||| || ||| Sbjct 18737 -ATCTTTCGCATCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCT 18795 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA 52560 ||||||| | || || || ||||| || ||||||| |||||||| ||||| | | Sbjct 18796 CCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCT 18855 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG--AG-CATGTTCAAGGAGG 52617 | | | | | | | || | || || || | || ||| ||| |||| Sbjct 18856 ---CTCACCTCAACAACAA---GCCATCAAACCAAGTCGTTGAAGACATCATCACCGAGG 18909 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || | ||||| ||||||| | || | ||| || || | ||| || || |||| Sbjct 18910 CTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGA 18969 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 |||| || ||||||| | ||||||||||| || || || ||||| | || ||| Sbjct 18970 ACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTC- 19028 Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 |||| ||| ||| ||| ||||||| ||| || || || || ||| | ||||| || || Sbjct 19029 GGCAACCAGAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTC 19088 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||| ||||||||||| ||||| || || Sbjct 19089 GGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGATTA 19129 >seq360 Length=110533 Score = 104 bits (114), Expect = 2e-17 Identities = 144/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| ||| || ||||||||||| || |||| ||| Sbjct 36743 CCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 36802 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTG 138542 | | |||||||||||||| || || || || || || ||| | || | || | ||| Sbjct 36803 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATC-CTGAATCTTGCTCTTGACGTTG 36861 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| |||||||||||||| || | || || || || || || || || Sbjct 36862 -TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 36920 Query 138603 AAAAATCTGCATGGCTT 138619 ||| | | |||| ||| Sbjct 36921 GAAACTGT-CATGACTT 36936 >seq5787 Length=111344 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||||||| || |||| Sbjct 90927 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 90868 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||||||||| || || || || || ||||| ||| || || | Sbjct 90867 AAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACG 90808 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||| || ||||| ||||| || Sbjct 90807 TTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTG 90748 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 90747 ACGAAGATCTGCAT 90734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||| | || ||| ||||| || || || || | Sbjct 90699 GACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCG 90640 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| ||||| ||||| || || || ||||| ||| || | || | Sbjct 90639 AAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTCACA 90580 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | ||| || | ||||| ||||| | || | || || ||||||| Sbjct 90579 TTG-TCGATGGTATCCGAGGACTCAACCTCAAGGGTGATTGTCTTTCCAGTCA 90528 >seq351 Length=85052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | | | |||||||| || |||||||||||| Sbjct 50442 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 50383 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| || |||||||||||||| || Sbjct 50382 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 50323 Query 138507 TATACCTTCTTTGTCGGT 138524 || ||||| ||||| || Sbjct 50322 AATGCCTTCCTTGTCTGT 50305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224746090400