Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq407 125 7e-24 seq5787 120 3e-22 seq360 87.8 2e-12 >seq407 Length=91491 Score = 125 bits (138), Expect = 7e-24 Identities = 356/543 (66%), Gaps = 23/543 (4%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| || ||| | || | ||||| || ||||| || | Sbjct 18600 CTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGG 18659 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || || | ||| ||| | ||| ||| | ||||| || ||| | | ||| Sbjct 18660 TGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATTGAG 18719 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTTACATGAAAACCAAAGGAGTTAT 47224 || |||||||||| || | |||| || |||| || | |||| | || | || Sbjct 18720 GGTATCTTCTTCTCCGG-ATCTTTCGCATCGATCTTCTGGTTGAAGAAGCGTGGTCTCAT 18778 Query 47225 GCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTT 47284 |||||||||||| || ||||||||| ||||| | ||||| ||| |||||||| |||| Sbjct 18779 GCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTT 18838 Query 47285 TGCCTG--------TCTCT-ACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335 |||||| ||||| || ||||| | | | |||||| | || Sbjct 18839 TGCCTGCCTGCTGTTCTCTCACCTCAACA--ACAAGCCATCAAA----CCAAGT------ 18886 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 ||| ||||| | |||| || |||| ||| ||| |||||| || | || || || Sbjct 18887 CGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCCT 18946 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 || | | | ||||||||||| || | ||| | | |||||||| || ||||| Sbjct 18947 CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGC 19006 Query 47456 CGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515 |||||| || ||| | || | | ||| ||| || | || || ||||| Sbjct 19007 CGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCTACCAACCCCTTCGA 19066 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 || ||| | ||||| || |||| |||||||||||||| ||||||||||| ||||| || Sbjct 19067 CTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGA 19126 Query 47576 ATA 47578 || Sbjct 19127 TTA 19129 >seq5787 Length=111344 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||| | ||| ||||| || || || ||||| || Sbjct 90960 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 90901 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || || ||| ||||||||||||| || || || || Sbjct 90900 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 90841 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| | ||| || Sbjct 90840 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTG-TCGATGGTGTCCGAAGACTCCAC 90782 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| ||||| || ||||| || || || |||||||| Sbjct 90781 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || ||||| ||||| |||| Sbjct 90732 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 90673 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||| | |||||||| || ||||| Sbjct 90672 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 90613 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | |||| ||| |||| ||| || Sbjct 90612 ATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 90553 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | || || || |||| Sbjct 90552 TCAAGGGTGATTGTCTTTCCAGTCA 90528 >seq360 Length=110533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || || || ||| || || || ||||| ||| ||||| Sbjct 36745 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 36804 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| || || || || || |||||||| ||| || || ||||| |||| || Sbjct 36805 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTG-TC 36863 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || |||| ||| | || ||||| || || || || || || Sbjct 36864 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 36923 Query 127105 AATCTGCATGGCTT 127118 | | | |||| ||| Sbjct 36924 ACTGT-CATGACTT 36936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475464721376800