Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq407 214 3e-50 seq339 192 1e-43 >seq407 Length=91491 Score = 214 bits (236), Expect = 3e-50 Identities = 569/864 (66%), Gaps = 36/864 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | ||| |||||||||||| ||||| ||||| Sbjct 18288 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 18347 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || ||| | | ||||||| || | ||| || Sbjct 18348 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGACGACGAGC-GCTTCTTCATCTC 18406 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| ||||| || || || ||||| || || |||||||| || |||| | Sbjct 18407 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 18466 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | |||||||| | |||||| || |||||||| |||||||| || Sbjct 18467 CTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 18526 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || ||||| ||| || Sbjct 18527 GGAGAACATCCACTCCGAGACATACTCC---CTCCTCATCGACACATACAT--CAG-CGA 18580 Query 25770 CGCCGAGAGA-GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || || | | || || || |||||||| |||| || ||||| | ||| Sbjct 18581 GCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAA 18640 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| || ||||||| | | ||| | | || |||| | || || | Sbjct 18641 GGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCAT 18700 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || | ||||| ||||| ||| ||| || || || | ||||||||| | Sbjct 18701 CGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGGTT 18760 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || || ||||||||| || ||| ||||||||||||||| | | ||||| Sbjct 18761 GAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGA 18820 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||| | |||| || |||||||||||||| | | | ||| | | |||| || || Sbjct 18821 GGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCACCTCAACAACAAGCCATC 18877 Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | | ||| | ||||||| |||||||| | |||||| ||||||| | Sbjct 18878 AAACCAAGTCGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCAC 18937 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | || |||||| || |||||| |||||||||| || Sbjct 18938 AGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 18997 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTAC 26240 || || ||||||| ||| || |||| ||||| ||||| | ||||| || Sbjct 18998 GTTCGTCGCCGACCGTCT------CCTCCTGGCACTCGGCAACCAGAAGCACTACA--AC 19049 Query 26241 GC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 || | ||||| |||||||| ||||| ||||| || | | ||| |||||||||||||| Sbjct 19050 GCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTC 19109 Query 26299 GAAAAGAGGGTCGGCGACTATCAA 26322 || ||| | ||||| || || ||| Sbjct 19110 GAGAAGCGTGTCGGTGATTACCAA 19133 >seq339 Length=67822 Score = 192 bits (212), Expect = 1e-43 Identities = 939/1467 (64%), Gaps = 63/1467 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || |||||||||||||||||||| |||||| ||||||| || | ||||| || Sbjct 51776 GTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CTGGCGAGCCTCAGG 51718 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| || ||||| ||||| | ||||| | || || || || | || || | || Sbjct 51717 AGAGTCAAAAGGCATGCGCAGAGCCAAGAAAG-CATCAGCAAGACCGTTGACACCAAGAC 51659 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||||| | ||| | |||| | |||||||||||||| || |||||| | Sbjct 51658 CGATGGGACGGTGACGGAAGTTGCTCTTGCGAGCTTCTGGCACGGGGTAGTGGTTGACCT 51599 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||| | |||| || |||| | || ||| | || ||| | | Sbjct 51598 CGATGATCTTGTTCAAGTTCT---TGGTGACGGT------CTGGGTGACCTGGTGGAGCT 51548 Query 221655 TGAACACCAACTCGC--CGC-CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | || ||| ||| ||| | | | || || | | | ||||| | Sbjct 51547 T---CTCGAAGTCGAAACGCTCGTTCTCAATG---TCGACGTATGTGGGCAGGGCGAGAG 51494 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| |||||||| |||||||| || |||| || ||||| || |||| Sbjct 51493 ATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCGGTGCAGA 51434 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 | ||| || |||||| |||| || || || || ||||| ||||||||||||| Sbjct 51433 GATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCAGCGTCCT 51374 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 ||||||| || | || || ||||| |||||| | || || | |||||| | Sbjct 51373 TGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCT 51314 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAG 221947 |||| |||| || ||| || ||| ||| | | || || | || | || || Sbjct 51313 -TCTGAGCGCGGACGGTC-TCACGACCCTTGCCCTCACGCTCGTATCG--CTCG---TAC 51261 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| || |||| | ||||| | || |||| || || ||| | || |||||| Sbjct 51260 AGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATC 51201 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 | | ||||| | || | | || | || ||||||||| || |||| |||||| | Sbjct 51200 AAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCG 51141 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | | || ||||||| |||| ||| || | |||||||| || Sbjct 51140 TAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAG 51081 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || | || |||||||| ||||| | || | ||| | ||| || |||||||||||| Sbjct 51080 GAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTGTTG 51021 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 || ||||| || | | | | || | ||| || | || || | ||||| || Sbjct 51020 CCGCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAG 50965 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC 222303 ||||||||| ||||||||||| | ||||| || ||| || | | | || | Sbjct 50964 ACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGC---GAATTCT-GT 50909 Query 222304 AGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 ||| | || || || ||||||| || ||||||||||||||| |||| | |||| Sbjct 50908 GGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGT 50849 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| || || || ||| || || | || | || || || || | || |||| Sbjct 50848 CGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAG 50789 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 |||| | | ||| | |||||||| || || ||||| ||||| | |||| Sbjct 50788 CGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGACA 50729 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATC 222539 | | ||| ||||| | | | |||||| || ||||| || | ||| | Sbjct 50728 TGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACGGCCACAC 50669 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACG 222596 |||| ||| | || || |||| | | | ||||| | || | ||||| | Sbjct 50668 GCATGATCATCTGTTGTGGTCTCT---CGGCAACCTTGCCGTTGATCCTCAAAAGGTATG 50612 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 | | ||||| |||||||| |||||||| | | || ||||| | | ||| ||| | || Sbjct 50611 ACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAAACGATGG 50552 Query 222657 CGGCGTCCAGCTCCGACTTGTGCTTTACG-CTCAACTCGAAAAAG-CGC-TCAGACACGA 222713 || || ||||| | |||||| | | || ||| | | | | | || || | | Sbjct 50551 CGCTGTTGAGCTCGTCCGCGTGCTTCATGACT---GTCGCATATGTCTCGTCTGAGATCA 50495 Query 222714 GGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAG 222773 ||| ||| || ||||| | ||||| | || |||||| || | | | | | || | | Sbjct 50494 TGGGCGCGGCCTTGTTGGTTTTTGGGTTGATGTAGTGGTATAGATCCGAGACGACAGCGG 50435 Query 222774 AGAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATA 222832 ||||| | || | ||||||||||| || || || |||||||| || | || | || Sbjct 50434 AGAACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATACGTGCGGCGAGAATG 50376 Query 222833 CCATAGTCAGGGTGCACGGTGGTCATG 222859 | ||||| ||||| | ||||||| Sbjct 50375 GCGTAGTCGGGGTGGGTGACGGTCATG 50349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928774323900800