Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq407 163 3e-34 seq339 136 5e-26 seq346 125 9e-23 seq4096 120 4e-21 >seq407 Length=91491 Score = 163 bits (180), Expect = 3e-34 Identities = 226/314 (72%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 19138 GCCTTTTGGTAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATG 19079 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||||||| | | ||||| | | | Sbjct 19078 TTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGG 19019 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| ||||||||||| ||||||||||| ||||||||| |||| | Sbjct 19018 AGGAGACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGG 18959 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||||| || || | || | | ||||| | |||||| |||| |||||| |||| Sbjct 18958 AGCGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATG 18899 Query 868931 ATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 || | | | | || | | || ||||||||| ||| | | | ||||||||||| Sbjct 18898 ATGT-CTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGAGAACAGCAGGCAGGC 18840 Query 868990 AAAGTCGCAGTGCA 869003 ||||||| ||||| Sbjct 18839 AAAGTCGGTGTGCA 18826 Score = 129 bits (142), Expect = 7e-24 Identities = 204/288 (71%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| ||||||||||||||| || |||||| Sbjct 18823 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTC 18764 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| ||||| | |||| || ||||| ||||| ||||| | |||||||||| Sbjct 18763 TTCAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCTCAATGGCGGCAAAG 18704 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 ||||||| || |||||||||| ||| | ||||| ||||||| || |||| Sbjct 18703 GCGATGAGACGGCAGGCAAAGGTG--GAG----TTCTTGTCGGAGATCCACCGCAGCGCC 18650 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 869415 ||||| ||||| || | | | || | ||||||||||| ||||||| || | | Sbjct 18649 CAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTACGTGCGT 18590 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | || || ||| || |||||||| ||||| || || ||||| Sbjct 18589 TGC-TTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 18543 Score = 125 bits (138), Expect = 9e-23 Identities = 180/253 (71%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | ||| Sbjct 18541 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATTTGC 18482 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || ||||||||| |||||||| || || ||||| Sbjct 18481 ACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCAGCGAAG 18422 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || ||||||||||| ||| ||| ||||||||||||| ||| ||| | ||||| Sbjct 18421 AAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGA--GACGCTTGTTCCAGT 18364 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | ||| || | ||||||||||||||||| |||||||||||||||| Sbjct 18363 CGTGAAGATCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTT 18304 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 18303 TGTACATTTGCCA 18291 >seq339 Length=67822 Score = 136 bits (150), Expect = 5e-26 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || |||| |||||| || || |||||||| ||||| ||||| Sbjct 51018 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 50959 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||||| | ||| || |||| ||||| | |||| || | Sbjct 50958 GGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAG 50899 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| ||||| ||||||||| | ||||| || | ||||||||||| || Sbjct 50898 CCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGTCGTAGATCCC 50839 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||| | |||||||| | ||| ||||| || | ||| | || | || Sbjct 50838 ATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAGCGTTGGGTGT 50779 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||| |||| ||||| |||| ||| ||||| ||| ||||||| || ||| Sbjct 50778 TCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAGTTGTA 50719 Query 1630362 GGT 1630364 ||| Sbjct 50718 GGT 50716 Score = 96.9 bits (106), Expect = 4e-14 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || || || | |||||| || || | |||||||||| ||||| ||| Sbjct 52069 GGTTGACAACCTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATG 52010 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| || ||||| ||||||||| || | || || |||||| | || Sbjct 52009 GC-TCGAAACACTCGTTGAAGCCCATGATCTGCGAGGTGGACGCAGTTGGCATGGGAGCG 51951 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 ||||||||||||||||| | || |||| | ||| || | || || ||| ||||||| Sbjct 51950 ACGAGGAGCGAGTTGCGGACACCATGCTCGGCGATCTTG-GCCTTGAGTGCGGCCCAGTC 51892 Query 1627512 CCAG 1627515 |||| Sbjct 51891 CCAG 51888 Score = 95.1 bits (104), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 18088 GTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCG 18147 |||||||||| |||||| |||||||| ||||||| |||||| ||||||| ||||| Sbjct 62167 GTCACCACCTATGGCGAATCGCACGGCAAAAGCGTCGGATGCATCGTCGACGGTGTGCCT 62108 Query 18148 CCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGC 18207 ||| || | || | || || || ||||| || || || ||||| || || Sbjct 62107 CCGGGCCTCGAGCTCACGGAAGCTGATATCCAACCCTCCATGACCCGCCGCCGCCCTGGA 62048 Query 18208 CAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACG 18267 ||| ||||||| | || || ||| ||||| ||| || |||||||||||||| Sbjct 62047 CAGAGCGCACTCACGACACCTCGCGACGAGAAAGATATGGTGGAAATCCAGTCGGGCACA 61988 Query 18268 GAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCC 18301 ||| | ||| | || | || || ||||| |||| Sbjct 61987 GAGCATGGCATTACATTGGGGTCACCCGT-GGCC 61955 Score = 93.3 bits (102), Expect = 5e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||| ||||||||||| || || || || ||| ||| || | |||||||| ||| Sbjct 61531 GACAGTATCGGCGGCACCGTTACCTGTGTCATTCGTAACTGTCCCTCCGGCCTCGGGGAG 61472 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || || || ||||| |||| ||| | ||||| ||||||||||| ||||| || ||| Sbjct 61471 CCTTGTTTCGACAAACTCGAAGCCACCCTCGCGCACGCCATGCTCAGCATCCCTGCGACC 61412 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || || ||||| || ||| ||| || Sbjct 61411 AAAGGCTTCGAAATCGGCTCCGGATT 61386 >seq346 Length=410248 Score = 125 bits (138), Expect = 9e-23 Identities = 127/163 (78%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1592132 TGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 |||||| || |||| ||| | || || ||| | || || ||| | || ||||| || Sbjct 211961 TGGGACCAGAAGTTCATGC-AGGTGGACCAGGAGATGCTGTTCGAGATCATTCTCGCAGC 212019 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||| | || |||||| | || |||||| | || |||||| | || || |||||||| Sbjct 212020 CAACTACATGGATATCAAGGCGCTTCTCGATGTGGGCTGCAAGACCGTCGCAAACATGAT 212079 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||| ||||||||||||||||| || || |||||| Sbjct 212080 CAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATC 212122 >seq4096 Length=57495 Score = 120 bits (132), Expect = 4e-21 Identities = 154/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | ||| || || |||| ||||||||| ||||||| | || Sbjct 39430 GCTTGGCCAGCTCACCGGGGAGGATGAGTCGGACGGAGGTCTGGATTTCGCGCGAGGAGA 39371 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCG-CCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 ||||| |||||| | |||| |||| | |||||||| ||| ||| |||| Sbjct 39370 TCGTGGACTTCTTGTTGTA-TGCGGCCAGCTTGGATGCCTCGGTTGCGACGCGCTCGAAG 39312 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||| || ||||||| || ||||| | ||||||||| || ||| ||| Sbjct 39311 ATGTCGTTGACGAAAGAGTTCAGGATGGACATGGCACGGTTGGAGATACCGGTGTCAGGG 39252 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAA 1254550 || ||||||||||| || || ||||||| Sbjct 39251 TGGACCTGCTTGAGGAC--TGGAGATGAA 39225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106641067374190