Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq445 147 7e-30 seq5787 122 3e-22 seq467 95.1 4e-14 >seq445 Length=88944 Score = 147 bits (162), Expect = 7e-30 Identities = 481/743 (65%), Gaps = 11/743 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||||| ||||| || || || ||||| | | | | |||| || Sbjct 3938 GCAATCGGTATCGATTTGGGTACGACCTACTCATGTGTGGGCATCTACAGAGATGACCGC 3997 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || |||||| | ||||| || || | ||| || || ||| Sbjct 3998 ATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTCGCCTTCACC 4057 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || |||||||| ||||| || |||| || || || || Sbjct 4058 GACACCGAGCGTCTCATCGGTGATTCCGCAAAGAACCAAGTCGCCATGAACCCCGTCAAC 4117 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| || || || | ||||| ||| | || || Sbjct 4118 ACAGTCTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTC----GACGATGCTGAGGTGCA 4173 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || ||||| || | || | ||| | | |||| || || | | Sbjct 4174 GGCCGACATGAAGCACTTTCCCTTCAAGGTCAT--CAACA-AGGGTGGCAAGCCGGTCGT 4230 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || | || || || | || || || ||| || || || ||||||||||| Sbjct 4231 GCAGGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCATCAATGGT 4290 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | ||| || ||||| | |||| ||||| | | ||||| Sbjct 4291 CCTCACCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGCACAGTCAACAACGCTGT 4350 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||| ||||| || || || || | ||||| ||||| || || ||||| Sbjct 4351 CGTCACTGTCCCAGCATACTTCAACGACTCTCAGCGCCAAGCAACCAAGGACGCTGGTCT 4410 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| | || || ||||| || || || || || ||||| || Sbjct 4411 CATCGCCGGCCTGAACGTTCTGCGCATCATCAATGAGCCTACCGCCGCGGCCATTGCCTA 4470 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || ||| || || | || || || || || || ||||| Sbjct 4471 CGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGACTTGGGCGGTGG 4530 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 4531 CACCTTCGATGTCTCTCTTCTTACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACTGC 4590 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || || || ||| | ||||| || || || || || || ||||| || || || || Sbjct 4591 CGGAGACACTCATTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAA 4650 Query 349915 AGAATTTAAGCGTCAAGCTAAAA 349937 || || || || || ||||| Sbjct 4651 TGAGTTCAAACGCAAAAATAAAA 4673 >seq5787 Length=111344 Score = 122 bits (134), Expect = 3e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || ||||| || || || Sbjct 90736 CATACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 90677 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || |||||||| ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 90676 GCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGG 90617 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || || || || ||| || ||||| || || | ||| || | | Sbjct 90616 AGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTCACATTGTCGATGGTATCCGAGGACT 90558 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| ||||| || | ||||||||| || | ||| Sbjct 90557 CAACCTCAAGGGTGATTGTCTTTCCAGTCACTGT 90524 Score = 95.1 bits (104), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || || ||||| || || || || | Sbjct 90968 TTTGCATACCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGT 90909 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || ||||| || || || ||||| | || || || | Sbjct 90908 AGTCCGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGT 90849 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || |||| || || || || || | || || | Sbjct 90848 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAG 90789 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || || || || || || |||||||| Sbjct 90788 ACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 >seq467 Length=92620 Score = 95.1 bits (104), Expect = 4e-14 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||| | || | ||| || | | || |||||||| | || || | || | Sbjct 30403 CCCGAGGAAGTCTCCGCCATGATTCTCGGGAAGATGAAGGAGGTCGCCGAGTCCTACCTC 30344 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || | || || | || || | ||||| |||||||| || || || || |||||| Sbjct 30343 GGAGAGAAGGTCACCAACGCAGTCGTCACTGTCCCAGCCTACTTCAACGACGCTCAGCGT 30284 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || ||||| ||| || || || | || ||||| | || |||| || Sbjct 30283 GCCGCCACCAAGGATGCCGGCGCGATCGCTGGTCTCAACGTTCTCCGCGTGGTTAACGAG 30224 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || | || || || || || || || ||| | ||| | || Sbjct 30223 CCCACCGCCGCCGCTTTGGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 30167 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | |||||||||||||| ||||| || | | || |||| |||| Sbjct 30166 ATCGTCTACGATCTCGGTGGTGGTACTTTCGATGTCTCCGTCTTGACCGTTGACCAGGGT 30107 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| | | || || ||||| || ||||| ||||| || ||||| || | Sbjct 30106 GTGTTCGAGGTTCAGTCTACCGCCGGTGACACCCATCTCGGTGGTGAGGATTTCGACCAG 30047 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 30046 CGTGTCGT 30039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515136555824210