Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq271 116 4e-21 seq339 95.1 1e-14 >seq271 Length=208823 Score = 116 bits (128), Expect = 4e-21 Identities = 295/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || ||||||| || ||||| || || || ||| ||| | | Sbjct 125019 CCCGTACCAATACCATCAGCGCCGTTGATGAGTATCATGGGAACGATCGGGATGTACATC 125078 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | | |||||||| | ||| |||| | | | ||| | | || Sbjct 125079 TCTGGCTCGATCGTCTTTCCGTCATCAGTATTGTAGGTCAACAACGCCTCGTCGGTCTGA 125138 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | || | | | ||| || | |||| ||||||| || | |||||| || Sbjct 125139 TGGAAGAGCCTCCTGGCGAAGGGAGACAGTCTCGTGTAGATGTAACGTGCGCTGGCAGCG 125198 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || | ||||| || || | || || | || ||| ||||| | ||||| |||| Sbjct 125199 TCGCTTCCACCCTGCAATCGAGAACCGAAATTGCCGCTGGGTTCGAGAATGTTGATGTTG 125258 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | ||||| ||| ||||||||| | || || || |||||| || ||| ||| Sbjct 125259 TTTGAACCCACAAAAGTCTGAGCCAGACCAACGATAGTCTGCTGCAGTGACGTTTCTCCG 125318 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 | || || ||| || | | || | || || | || | ||||||| | ||| || Sbjct 125319 TACGAGTATGCTGTCAGCCCTGAGACCGAGCCGGCAAGCTCCACCACCTTGACGTCTTTC 125378 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 |||||||| | || ||| | ||| |||||||||||||| ||| || | ||| || Sbjct 125379 TTCAGGTTCCGCCGGAAACAAGTGTACATCACCTTGCGCTGACCTGGCTTGAGACCATCA 125438 Query 152296 ACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||||| || ||| || |||| Sbjct 125439 ACGACAGAGGGAATGGATCGCATGTTGTC 125467 >seq339 Length=67822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || |||||||| ||||| || | |||||||||||| | Sbjct 51934 CGCAACTCGCTCCTCGTCGCTCCCATGCCAACTGCGTCCACCTCGCAGATCATGGGCTTC 51993 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | |||||||||| || || || || |||||| Sbjct 51994 AACGAGTGTTTCGAGCCATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAG 52053 Query 55604 TT 55605 || Sbjct 52054 TT 52055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174479986000