Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq339 178 1e-39 seq5787 152 6e-32 seq271 116 4e-21 seq360 105 8e-18 >seq339 Length=67822 Score = 178 bits (196), Expect = 1e-39 Identities = 562/862 (65%), Gaps = 17/862 (2%) Strand=Plus/Minus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || || || ||||||||||| ||||| |||| | | || |||||| || || ||| Sbjct 51497 AGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCGGTG 51438 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | ||| || || || |||| ||| |||||||| |||| |||| |||| Sbjct 51437 CAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCAGCG 51378 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| ||||| ||||||||||||||| || | || ||||||||| | ||| Sbjct 51377 TCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 51318 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGC 81143 | || | || ||| || || ||||| || | | || |||| ||| Sbjct 51317 AGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGC 51258 Query 81144 TTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 || ||||||| || |||| | |||| || | |||||||||| ||||||||||| Sbjct 51257 -TCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAA 51199 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||| ||| | | ||| ||| ||||||||| || |||| ||| || || Sbjct 51198 AGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTA 51139 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 |||||| ||||| ||| || ||||||| | || ||||| ||| | || | ||| Sbjct 51138 GAACAGATCGCGAGCA-CGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGG 51080 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGAC 81376 | || || || ||||||||||| | |||| ||| | | || | |||| Sbjct 51079 AGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTG---T 51023 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||| ||||||| |||||| || || || |||||| ||||||| ||| || | || || Sbjct 51022 TGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGAC 50963 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA--T 81494 | | || ||||| || || ||| | || | ||||| | || || | Sbjct 50962 CGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGT 50903 Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554 || || || ||||| || | ||| || ||| || || || | || || || Sbjct 50902 TG--AGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGTCGTA 50845 Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT 81614 || || || ||||| || | ||||||||| | | ||| ||| || || |||| | | Sbjct 50844 GATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAGCGTT 50785 Query 81615 TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674 || || || ||||||| || || | ||| || |||| || ||| ||||| Sbjct 50784 GGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGACATGTA 50725 Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 || ||||| || || || || || || ||||| || |||| || |||||||| Sbjct 50724 GTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACGGCCACACGCAT 50665 Query 81735 AAACATGTACTGGGGCGTCTCG 81756 | ||| | || || ||||| Sbjct 50664 GATCATCTGTTGTGGTCTCTCG 50643 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| ||||| ||||| |||||||||| | |||||| Sbjct 52376 GTGCGAAGGTAGTACATGCCAGTCTTCAGGCCGAGCTTCCAGCCGGCGAAGTGCATGCTG 52317 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| || | | ||||| | || |||| ||||||||| |||||||||| |||| Sbjct 52316 GTGATTTTGCCCATGGTGGGCTCCTTCATGTGGATGTTCAGGCTCTGAGACTGATCGATG 52257 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 ||||| ||||| || || | ||| Sbjct 52256 AAAGCACCACGGTCAGCGGACAT 52234 >seq5787 Length=111344 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || | ||||| ||||| Sbjct 90734 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCTTCG 90793 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| |||| || |||||||||||||| ||||| |||||||| Sbjct 90794 GACACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 90853 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||||||||| | || || || | ||||| || Sbjct 90854 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCTCGGACTACAAC 90913 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | || ||||| ||||| Sbjct 90914 ATCCAGAAGGAGTCGACGCTCCATCTCGTCCTCCGCCTTCGTGGTGG 90960 Score = 145 bits (160), Expect = 9e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||||||||| |||| ||| | ||| ||||| Sbjct 90530 ACTGGAAAGACAATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 90589 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| ||||||||||||||||||||||| || || || || ||| Sbjct 90590 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTCGCGGGAAAG 90649 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| || ||||| ||| ||||| || | || ||||| |||||||| || Sbjct 90650 CAGCTTGAGGATGGGCGCACCCTCAGC-GACTACAACATTCAGAAGGAGTCCACTCTCCA 90708 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||| || || ||||| Sbjct 90709 CTTGGTGCTGCGCCTCCGTGGTGG 90732 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || |||||||||||||| || || || || |||||| Sbjct 90962 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 91021 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || ||||| ||||||||||| || || || || || Sbjct 91022 GACACAATCGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAA 91081 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | || || || Sbjct 91082 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAAC 91141 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||| || || | || | ||||| || || ||||| Sbjct 91142 ATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGACA 91191 >seq271 Length=208823 Score = 116 bits (128), Expect = 4e-21 Identities = 298/449 (66%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| |||||||| || | || || |||||||| |||||||||||||| || Sbjct 125462 CATGCGATCCATTCCCTCTGTCGTTGATGGTCTCAAGCCAGGTCAGCGCAAGGTGATGTA 125403 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | | || || | ||||||| || ||| | ||||||| | |||| | |||| || Sbjct 125402 CACTTGTTTCCGGCGGAACCTGAAGAAAGACGTCAAGGTGGTGGAGCTTGCCGGCTCGGT 125343 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || || || || |||| || |||| || ||| || || || || Sbjct 125342 CTCAGGGCTGACAGCATACTCGTACGGAGAAACGTCACTGCAGCAGACTATCGTTGGTCT 125283 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 ||||||| ||||| ||| |||| ||| | ||| | ||||| || || || ||| | Sbjct 125282 GGCTCAGACTTTTGTGGGTTCAAACAACATCAACATTCTCGAACCCAGCGG-CAATTTCG 125224 Query 32199 GACCCGGCTCGC-CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC----CCGT 32253 | | | | || ||||| | || ||||| ||| | |||||||||| ||| | || Sbjct 125223 GTTCTCGATTGCAGGGTGGAAGCGACGCTGCCAGCGCACGTTACATCTACACGAGACTGT 125164 Query 32254 CTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAAT 32313 ||| |||||| | | | | | ||| | | | | ||||| ||| || | | |||||| Sbjct 125163 CTC---CCTTCG-CCAGGAGGCTCTTCCATCAGACCGACGAGGCGTTGTTGACCTACAAT 125108 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 ||||||||| || | ||||||| | | | |||| ||| | |||| ||||| | Sbjct 125107 ACTGATGACGGAAAGACGATCGAGCCAGAGATGTACATCCCGATCGTTCCCATGATACTC 125048 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||||| || || || || || ||||| Sbjct 125047 ATCAACGGCGCTGATGGTATTGGTACGGG 125019 >seq360 Length=110533 Score = 105 bits (116), Expect = 8e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || ||||||||||| || || ||||| ||||| || | ||| Sbjct 36923 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 36864 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 36863 GACAACGTCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 36804 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||||| || || | ||| ||||| || |||| || Sbjct 36803 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTTTGAGC-GACTACAACATCCAGAA 36745 Query 27594 GG 27595 || Sbjct 36744 GG 36743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267127698400