Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5787 161 2e-34 seq360 120 7e-22 seq351 98.7 2e-15 seq339 91.5 3e-13 >seq5787 Length=111344 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| || |||||||| || |||| || || Sbjct 90955 ACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 90896 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || |||||||| |||||||| | || |||||||| || |||| || Sbjct 90895 GCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCC 90836 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| || || ||||| | Sbjct 90835 CTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAA 90776 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || ||||||||||| || || | |||||| Sbjct 90775 GGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || || ||||| || || ||||| | ||||| Sbjct 90717 AGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCC 90658 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||||| || |||||||| Sbjct 90657 TCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 90598 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || ||| |||||||| || ||||| ||| Sbjct 90597 TGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATTGTC 90538 Query 211083 TTTCCCGT 211090 ||||| || Sbjct 90537 TTTCCAGT 90530 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || ||| ||| || || ||||| ||||| | ||| Sbjct 91186 TCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAG 91127 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||| || || || ||||||||||| |||||||| ||||| ||||| || || || | Sbjct 91126 TGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGAT 91067 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| |||||||| ||||| ||||| || || || || Sbjct 91066 ACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTC 91007 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| || || | ||||| Sbjct 91006 GAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 90962 >seq360 Length=110533 Score = 120 bits (132), Expect = 7e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 || |||||||| || || | ||| | || ||||| || || ||||| || |||||||| Sbjct 36745 TTCTGGATGTTGTAGTCGCTCAAAGTTCGG-CCATCCTCGAGTTGCTTTCCGGCGAAGAT 36803 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | || |||||||| || || | ||| ||||| ||||| ||||| || ||||| || Sbjct 36804 CAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGTC 36863 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||||||| || || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 36864 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 36923 >seq351 Length=85052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 50426 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 50367 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| ||||| |||||||| || |||| ||||||||||| Sbjct 50366 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTC 50308 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||||| || || || ||||||||||| || ||| |||||||| ||||||| Sbjct 50237 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCCACCTCGAGGGTGATCG 50178 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| |||||||| ||||| || || | |||||| Sbjct 50177 TCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 50144 >seq339 Length=67822 Score = 91.5 bits (100), Expect = 3e-13 Identities = 178/262 (68%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCA---TCTTTGTACGCAATGAAGG 178142 |||| |||||||| ||||||||||| ||| ||||| || ||||| ||| | | Sbjct 51415 TTCCCAAGTTCTTCTGGTTGCTCTTGCTGT---TGGCAGCGTCCTTGTAGAGGATGTATG 51359 Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 | | || ||| | ||||||| |||| ||| || ||| |||| ||| || ||||| | Sbjct 51358 GGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGAGCGCGGACGG 51299 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 ||| | || || ||| |||||| | ||| ||||||||||| || | || | Sbjct 51298 TCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGT 51239 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 |||||||| | |||||||| ||| | ||||| | | | |||| | || || Sbjct 51238 AGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCT 51179 Query 178323 TCACTCGTTTCATGAAGAGGTC 178344 || || ||||||||||| || Sbjct 51178 CAACACGCTTCATGAAGAGATC 51157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159061850575550