Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5787 196 1e-44 seq360 129 1e-24 seq407 111 3e-19 seq351 87.8 4e-12 >seq5787 Length=111344 Score = 196 bits (216), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 90961 ACCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 90902 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| ||||| || ||||| |||||||| || |||||||| || Sbjct 90901 GAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGG 90842 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| || || Sbjct 90841 AATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 90782 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | |||||| ||||| |||||||| Sbjct 90781 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| || | ||||| || || || |||||||| |||| | Sbjct 91188 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 91129 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| ||||| | || ||||| || || Sbjct 91128 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 91069 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| | || ||| | ||||| ||||| || | || ||| Sbjct 91068 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 91009 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 91008 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 90962 Score = 127 bits (140), Expect = 4e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || || ||||||||||| Sbjct 90733 ACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCT 90674 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || ||||| | ||| || ||||| || Sbjct 90673 GAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGG 90614 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||||||||||||| ||||| || || | ||||| || ||||| | || | Sbjct 90613 AATGCCCTCCTTGTCTTGGATC-TTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAA 90555 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | || || ||||| ||||| || |||| Sbjct 90554 CCTCAAGGGTGATTGTCTTTCCAGTCA 90528 >seq360 Length=110533 Score = 129 bits (142), Expect = 1e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || ||||||||||| ||||| || ||||| |||||| Sbjct 36745 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 36804 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 || || |||||||| || || |||||||| || || ||| ||||| || ||| | || Sbjct 36805 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATC-TTGCTCTTGACGTTGTC 36863 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| || | || || ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 36864 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 36923 >seq407 Length=91491 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||| ||||| || | |||||| | ||||| ||||| ||||| || || ||| | || Sbjct 18961 TCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTCCTCC 19020 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 |||| || || || |||| || ||| | | |||||||||| || |||||| || Sbjct 19021 TGGCACTCGGCAACCAGAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACA 19080 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || ||| || || || ||||||||||| ||||||||| | ||||| |||| | ||| Sbjct 19081 TCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGATTACCAAAAGGCCG 19140 Query 230407 GTGT 230410 |||| Sbjct 19141 GTGT 19144 >seq351 Length=85052 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 50441 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 50382 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| ||||||| || |||||||| ||| Sbjct 50381 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 50322 Query 282993 ATACCCTCCTTGTC--TTGGAT 283012 || || |||||||| |||||| Sbjct 50321 ATGCCTTCCTTGTCTGTTGGAT 50300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046657793129780