Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000966595.1_202015-03-31] 6,070 sequences; 31,914,300 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5787 156 4e-33 seq351 131 2e-25 seq360 98.7 9e-16 >seq5787 Length=111344 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| ||||| ||||||||| ||||| ||||| ||| Sbjct 90960 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 90901 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| |||| ||||||||||| | |||| Sbjct 90900 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 90841 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| |||||||| Sbjct 90840 ATGCCCTCCTTGTCCTGGATCTTAGACTT-GACGTTGTCGATGGTGTCCGAAGACTCCAC 90782 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 90781 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 90734 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| |||||||||||||||||||| || || || Sbjct 91188 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 91129 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||||||||| || ||||||||||| |||| || Sbjct 91128 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 91069 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||| | ||| | || | |||| ||| | | | ||||| ||||||| Sbjct 91068 ATACCCTCCTTGT-CTTGAATCTTCGACTTC-ACGTTGTCGATTGTGTCTGATGACTCCA 91011 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || || || || ||||| ||||| || ||||| Sbjct 91010 CTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 90962 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||||||||| |||||| | Sbjct 90732 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 90673 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || |||||||| || ||||| || || ||||| ||||| | ||| Sbjct 90672 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 90613 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 90612 ATGCCCTCCTTGTC 90599 >seq351 Length=85052 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 50442 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 50383 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| |||||||||||||||||||| ||||||||||||||||||| || Sbjct 50382 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 50323 Query 41755 AACGCTCTCCTTGTC 41769 || || |||||||| Sbjct 50322 AATGCCTTCCTTGTC 50308 >seq360 Length=110533 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 ||| | ||||||| ||||| |||||| | || || | || ||||| ||||| |||| Sbjct 36737 TGCGCACCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGG 36796 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCT-TC 41785 |||| |||| ||||||||||||| || | | |||||| ||| ||| | ||||| | Sbjct 36797 CGAAGATCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCC-TGA-ATCTTGCTCTT 36854 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| |||||||||||| | || || || || ||||| || || Sbjct 36855 GACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 36914 Query 41845 CTTTACGAAA 41854 ||| |||||| Sbjct 36915 CTTCACGAAA 36924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462268922684000