Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1700 159 4e-34 >seq1700 Length=96718 Score = 159 bits (176), Expect = 4e-34 Identities = 552/852 (65%), Gaps = 13/852 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | || || || ||||| ||||| || ||||| | || || || |||| Sbjct 69179 TTTGGTAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCT 69238 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 ||||||| || || || || ||||| | | | || | || || ||| | || Sbjct 69239 CCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTG-GTTGCCGAGTGCCAGGAGG 69297 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | || || || || || || ||||||||||| | | | ||||||||| | || Sbjct 69298 AGACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAG- 69356 Query 16853 CGTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || || || || || || | || ||||| || || || || || | || || Sbjct 69357 CGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGAT 69416 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 |||| || | || || | | || || || |||| ||| || || || Sbjct 69417 GTCTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGAGAACAGCAGGCAGGCAAA 69476 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| || | |||||||| | | ||| || ||||| || || || | |||||||| Sbjct 69477 GTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 69536 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || || ||||| ||||| || |||| ||||| || || || ||||| |||||||| Sbjct 69537 GAGACCACGCTTCTTCAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCTC 69596 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 | || ||||| ||||| | || ||| | || | || |||| ||||| Sbjct 69597 AATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGATCCACCG 69656 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 | || |||| || || || | ||||| || | || ||||| || || | | Sbjct 69657 CAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTA 69716 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 | || || | ||| | || || || |||||||| ||| ||| | |||||||| Sbjct 69717 CGTGCGTTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGAGTG 69776 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||||||||| ||||| || ||||| ||||| ||||| || | ||||| ||||| Sbjct 69777 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATTTGCACTTC 69836 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| || || || || ||||| |||||||| || || ||||| || || Sbjct 69837 TCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCAGCGAAGAAGGC 69896 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGC----GCCAGTCCTT 17445 || | || ||||| | ||||| || || || |||| |||||| | Sbjct 69897 CAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTG--AG-ACGCTTGTTCCAGTCGTG 69953 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||| ||||| | ||| | || |||| |||||| || ||| | |||||||| || Sbjct 69954 AAGATCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTA 70013 Query 17506 CATATTCCAAAT 17517 ||| | ||| || Sbjct 70014 CATTTGCCAGAT 70025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517500994038600