Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1789 87.8 2e-12 >seq1789 Length=118145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | ||| || ||||| || | ||| || ||||| | ||| | Sbjct 19728 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCA 19787 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| | ||||| | | ||||| ||||||||||| || || ||| Sbjct 19788 TCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTG 19847 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| || | ||| || || | | || || |||| |||||| Sbjct 19848 TCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATG 19907 Query 94973 GTTTTTCCAGT 94983 || |||||||| Sbjct 19908 GTCTTTCCAGT 19918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || ||| | ||||| |||| || || ||||| ||||| || || ||| Sbjct 19560 TCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTG 19619 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | || || || | ||||| Sbjct 19620 TCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATC 19679 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| || || ||||||||||| Sbjct 19680 GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252562902200