Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1700 149 6e-31 seq1789 118 1e-21 seq5725 105 6e-18 >seq1700 Length=96718 Score = 149 bits (164), Expect = 6e-31 Identities = 346/514 (67%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | ||||||||| || ||||||| | || | | | Sbjct 69692 ATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAACTCC 69633 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| ||| | | |||||||| | ||||| |||| || || || | Sbjct 69632 ACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCT 69573 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || || | ||||| | | || || | || | ||||||||||||| || || ||| Sbjct 69572 TTCGCATCGATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCCGGCCTCACCTTCTCCAA 69514 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || ||||||||| |||| || |||||||| || || || | | | Sbjct 69513 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCCTGCCTG--CTGTT-CTC 69457 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGT-GCTGAGCATGTTCAAGGAGGCGGTGG 46381 || | | || |||||| | | | ||| | || ||| ||| ||||| || | Sbjct 69456 TCACCTCAACAACAAGCCATCAAACCAAGTCGTTGAAGA-CATCATCACCGAGGCTGTCG 69398 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 ||| ||| ||||||| | || | ||| || || ||| || || || |||||||| Sbjct 69397 TCATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCA 69338 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 || |||||| | ||||||||||| || || ||||| || ||| || || | | | Sbjct 69337 AGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACC 69278 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 |||||| | |||| ||| || || || || ||| | ||||||||||| | |||| Sbjct 69277 AGAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCA 69218 Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || || ||||| ||||| ||||| || || Sbjct 69217 AGACCAACTTCTTCGAGAAGCGTGTCGGTGATTA 69184 >seq1789 Length=118145 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| || || | || |||||||| ||||||||||| ||||| Sbjct 19716 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 19775 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 19776 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 19835 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | |||||| | Sbjct 19836 ATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 19895 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || || || Sbjct 19896 TCAAGGGTGATGGTCTTTCCAGT 19918 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | ||| |||||| |||||||||||||| Sbjct 19260 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 19319 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | ||||| || ||||| ||| Sbjct 19320 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 19379 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | || || | ||||| | Sbjct 19380 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 19439 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| || || || ||||| || ||||| Sbjct 19440 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||||||||||| || |||||||| || Sbjct 19488 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 19547 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || |||||||| ||| |||| || ||||| ||||| || || Sbjct 19548 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 19607 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 19608 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 19667 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 19668 TCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 >seq5725 Length=16029 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 12466 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 12407 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 12406 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 12347 Query 131127 GATTCCTTCTTTGTCGGT 131144 || ||||| ||||| || Sbjct 12346 AATGCCTTCCTTGTCTGT 12329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972118396800