Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1789 104 2e-17 seq1447 84.2 2e-11 >seq1789 Length=118145 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || | |||||| ||||||||||||| || Sbjct 19486 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 19427 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| ||||| || || || ||||| || || Sbjct 19426 GACACAATCGACAACGTGAAGTCGAAGATTCA-AGACAAGGAGGGTATCCCACCGGATCA 19368 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || |||||||| || | || || | || || | |||||||| Sbjct 19367 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAA 19308 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || || ||| || || || ||||| | || | |||||| Sbjct 19307 CATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGA 19259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || | ||||| | || |||||||| || Sbjct 19714 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCTTCG 19655 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 19654 GACACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 19595 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | || || | ||||| | || ||||| Sbjct 19594 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCTCGGACTACAAC 19535 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| ||| | || || Sbjct 19534 ATCCAGAAGGAGTCGACGCTCCATCTCGTCCT 19503 >seq1447 Length=163572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || | ||||| |||| ||||||||||| ||||| ||| Sbjct 89221 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 89162 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || | ||| || ||| || || || || || ||||| ||||||||||| | Sbjct 89161 GACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 89102 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 || || ||||| || ||| | || |||| || ||| || |||| ||||| || || || Sbjct 89101 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTTTGAGCGACTACAACATCCAGAA 89043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291586229425