Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1700 116 8e-21 seq5856 102 2e-16 seq3046 86.0 1e-11 >seq1700 Length=96718 Score = 116 bits (128), Expect = 8e-21 Identities = 267/397 (67%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 69202 TCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 69261 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | | ||| ||||| | || || ||||| || || ||||| | Sbjct 69262 GCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGGTCGGCGACGAACTCGATG 69321 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || | | |||||| || | | ||| || | || || || | Sbjct 69322 TATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGTGAGG 69381 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC-ACCTGTGCCAGAGACAG 251801 || |||| ||| || | || ||||| | | || |||| || | || | Sbjct 69382 AACTCCTGCTCGATGACGACAGCCTCGGTGATGA-TGTCTTCAACGACTTGGTTTGATGG 69440 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| | || | ||| |||| || | |||| | ||||| |||||||| || Sbjct 69441 CTTGTTGTTGAGGTGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCACG 69500 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | ||||| ||| | | |||||| Sbjct 69501 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAA 69560 Query 251922 GATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTC 251957 ||| | || ||| ||||| ||||| | | |||||| Sbjct 69561 GATCGATGCGAAA-GATCCGGAGAAGAAGATACCCTC 69596 >seq5856 Length=44561 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| |||||||| || || || ||||| || || ||||||||||| || ||||||||| Sbjct 28735 TCATCGGACCCAACGGAGCCGGAAAGTCAACTCTGATCAAAGTCCTCACCGGCGAGACCG 28794 Query 280234 AGGCCACTG-AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || | | |||| || ||||||||||||| |||| || | ||| || ||| Sbjct 28795 TG-CCGCAGCAGGGCAAAGTCGAGAAGCATCCCAACTTGCGTATCGGGTACATCAAGCAG 28853 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 || || | | ||| |||||| ||| |||| | |||||| ||||| ||| | || ||| Sbjct 28854 CATGCCCTGGAGCACGTCGAGATGCACATGGAGAAGACTCCCAACCAGTACCTGCAATGG 28913 Query 280353 CGCTATGC 280360 || || || Sbjct 28914 CGTTACGC 28921 >seq3046 Length=210927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||| || ||||| ||||| || ||||| || || |||| || || Sbjct 48835 CTCCCGTATCGCAGTCATCGGTCCCAACGGTGCTGGCAAGTCGACTCTTGTCAACGTTCT 48894 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCC-GTTTGGAAGCATCCCAACATGCGGATGG 280278 ||| || ||| | || ||| | |||| || | |||| ||||| || || | Sbjct 48895 GACCGGTGAG-CTCATCCCAACCAAGGGTGATGTCTACCAGCACGAGAACATCCGTATCG 48953 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || |||||||||||| ||| ||||| ||||||| |||| ||| || | Sbjct 48954 CCTACATCAAGCAGCACGCTTTCGCCCATATCGATCACCACCTCGACAAGACCCCATCCG 49013 Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | ||||| || ||||| | | || | ||| |||||| ||| || ||||||| Sbjct 49014 AGTACATCCAATGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGATCG 49065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027745998648695