Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1700 194 3e-44 seq1789 178 2e-39 seq1447 116 7e-21 seq5725 113 8e-20 seq5856 93.3 8e-14 >seq1700 Length=96718 Score = 194 bits (214), Expect = 3e-44 Identities = 573/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || |||||||||||||| |||||| | Sbjct 69165 CATGACACCGGCCTTTTGGTAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCC 69224 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||| |||||||||||| |||||||| ||| | ||||| ||| || Sbjct 69225 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTGCC 69284 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 |||||| || | ||||| || |||||||||||||| |||| ||| || | | ||| Sbjct 69285 GAGTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTT 69344 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| || | | ||| || |||| |||||| | ||| |||| ||| || |||| | Sbjct 69345 CATTCCGAGGA-GCGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAG 69403 Query 10174 CTTCCTCGACGATGCTCTTTACCACGTCAAGG---GACAGCTTGTTCTCGAGCTTCGAAT 10230 ||||| |||| | | | | ||| | || || ||||||| | ||| | || Sbjct 69404 ---CCTCGGTGATGATGTCTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGAGA 69460 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 |||| || |||| | ||| | ||||||||| ||| ||||| ||||||||| | Sbjct 69461 ACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGA 69520 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | || ||||||||||| || || || || |||||| || | ||| || |||| Sbjct 69521 AGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATCGATGCGAAAGATCCGG 69580 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTCG 10409 |||| | | |||||| | | | |||||| ||| || || |||| | | || Sbjct 69581 AGAAGAAGATACCCTCAATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTCT 69640 Query 10410 CG-CGAAAAGTATTTCG-AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 | || | | | || || ||||| | |||||||| | | | ||||| | ||| Sbjct 69641 TGTCGGAGA-TCCACCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCG 69699 Query 10467 ATAGCCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAG 10522 || || | |||||| | || ||| || |||| || | || | | || | ||| Sbjct 69700 ATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCG--CTGATGTATGTG--TCGATGAG 69755 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582 ||||||||| |||| ||||| | |||| | |||| | ||||||| || Sbjct 69756 GAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCG 69815 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| ||||| || ||| | | | |||||||| | || ||||| Sbjct 69816 GGCCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCC 69875 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702 ||| | || |||||| | |||| ||| ||||||| |||||| || ||||| || Sbjct 69876 ATCCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAG 69935 Query 10703 ----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 || || |||||| | ||||| | ||| | || |||||| ||||||||| Sbjct 69936 ACGCTTGTT----CCAGTCGTGAAGATCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGA 69991 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | ||| ||||||| |||||||| || Sbjct 69992 AGGAGGCCTCGGCCTTTTTGTACATTTG 70019 >seq1789 Length=118145 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||||||| || ||| ||| || || ||||| ||||| || Sbjct 19259 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 19318 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||| || || || | |||||| |||||||| ||||| | ||||| || ||||| Sbjct 19319 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 19378 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||||||||||||||| | ||| ||| ||||| ||||||| ||| || || Sbjct 19379 GATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 19438 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 19439 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || ||||| ||||| || |||||||| || || ||| Sbjct 19488 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 19547 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || | || |||||||| || ||| Sbjct 19548 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 19607 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 19608 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 19667 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||| ||||||||||| |||||||| Sbjct 19668 TCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || || ||||| || ||| | Sbjct 19716 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 19775 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 19776 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 19835 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| ||| || |||||||| || | || || || Sbjct 19836 ATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 19895 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| ||||| || Sbjct 19896 TCAAGGGTGATGGTCTTTCCAGT 19918 >seq1447 Length=163572 Score = 116 bits (128), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| | || | ||||| || | ||||| |||||||| || Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 89102 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| ||||| || || ||||| || || ||||| ||||||| ||| Sbjct 89103 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCG 89162 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || |||||||||||||| ||||| Sbjct 89163 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 89221 >seq5725 Length=16029 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || |||||| Sbjct 12465 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 12406 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | |||||||| |||||| Sbjct 12405 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 12346 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 12345 ATGCCTTCCTTGTCT 12331 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| | |||||| ||||||||||| | ||||| || || | ||||||||| Sbjct 12259 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCCACCTCGAGGGTGATGGTC 12200 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| ||||| |||||||| Sbjct 12199 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 12168 >seq5856 Length=44561 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || ||||| || | |||||||||||| ||| | |||| ||| |||| | || | Sbjct 28922 GGCGTAACGCCATTGCAGGTACTGGTTGGGAGTCTTCTCCATGTGCATCTCGACGTGCTC 28863 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | |||||||| | |||| | || |||| ||||||||||||| || |||| | Sbjct 28862 CAGGGCATGCTGCTTGATGTACCCGATACGCAAGTTGGGATGCTTCTCGACTTTGCCCTG 28803 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 ||| | ||||||||||||||| ||||| || || | ||| || || || ||||| Sbjct 28802 CTGCGGCACGGTCTCGCCGGTGAGGACTTTGATCAGAGTTGACTTTCCGGCTCCGTTGGG 28743 Query 225154 GCCAAT 225159 || || Sbjct 28742 TCCGAT 28737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921542967669400