Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1700 372 6e-98 seq3840 269 5e-67 >seq1700 Length=96718 Score = 372 bits (412), Expect = 6e-98 Identities = 603/853 (71%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || |||| |||||||||||||||||| || || Sbjct 70025 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 69966 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 ||||||| || |||| | | |||| | |||| || || ||| || Sbjct 69965 TCCAAGGATCTTCACGACTGGAACAAGC-GTCTCAACGACGACGAGCGCTTCTTCATCTC 69907 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | |||||||||||||| || || || ||||| ||||| |||||||| | | Sbjct 69906 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 69847 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||| ||||| | ||||| ||||||||||||||||||||||| || Sbjct 69846 CTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 69787 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| |||||| || ||| Sbjct 69786 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAA 69727 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | || ||||| ||||| || | || || |||||| |||||||| || Sbjct 69726 GCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGA 69667 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||||||| |||||| | | || | | || || | | | || | |||| Sbjct 69666 CTGGGCGCTGCGGTGGATCTCC-GACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCT 69608 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || ||||| | ||||| ||||||||||| || | ||||| || ||||||||| | ||| Sbjct 69607 TTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGGTTGAAGA 69548 Query 42775 AGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || |||||||| ||||||||||| ||||| |||||| | | |||||||| Sbjct 69547 AGCGTGGTCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 69489 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 |||| | |||||||||||||| |||||||| ||||||| ||||||| || || Sbjct 69488 ATGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCACCTCAACAACAAGCCATCAAAC 69432 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 | || | ||||||||| ||||| || | |||||| ||||||||||||| | Sbjct 69431 CAAGTCGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGAC 69372 Query 42954 TCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 | || ||| ||| | || |||| |||||| | | ||||||||| | |||||| ||| Sbjct 69371 GCCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTT 69313 Query 43013 CGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||||||||||| |||||| || || || ||| | | ||||||| | | || Sbjct 69312 CGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAG-CACTACAACGCTACCAACC 69254 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 |||||||||| |||||||||||||| | | |||||||||||||| ||||||||||| | Sbjct 69253 CCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTG 69194 Query 43132 TCGCCGACTACCA 43144 ||| || ||||| Sbjct 69193 TCGGTGATTACCA 69181 >seq3840 Length=90666 Score = 269 bits (298), Expect = 5e-67 Identities = 1034/1601 (65%), Gaps = 82/1601 (5%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || || ||||| ||||||| || || Sbjct 34240 GTTGACAACCTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGG 34299 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| | ||| || ||||| ||||||| ||| |||||| |||||||| | || Sbjct 34300 CTCGAAACACTCGTTGAAGCCCATGATCTGCGAGGTGGACGCAGTTGGCATGGGAGCGAC 34359 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 || || ||| | || || ||| || | ||| | |||| || |||||||| Sbjct 34360 GAGGAGCGAGTTGCGGACACCATGC-TCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 34418 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | ||| || | | | ||||||||||| | || ||| |||||| Sbjct 34419 A---------GAGATCAGTAGGAGTCACACCCCACATGTCGTATTGGAGCTCGCCCTTGG 34469 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG--GCCAGCTTACAGCT 244386 ||||||| |||||||| ||| ||| || || || ||| || || | || Sbjct 34470 AGACGGGGGACCCCTCGTATGTCTCGTATGGTCCAA-GCT-TGGCAGCGAGATCGCATGA 34527 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || ||| || |||| ||||||||||||||||||| |||| | | ||| |||| Sbjct 34528 GGCGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTGGCGAGCCT- 34586 Query 244447 GCCGCAG-GTGAAGGGG-ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || || || || |||| || || ||| | || || || || | || || Sbjct 34587 -CAGGAGAGTCAAAAGGCATGCGCAGAGCCAAGAAAGCATCAGCAAGACCGTTGACACCA 34645 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAG 244561 | |||||||| | ||| || |||| | | || ||||| ||||||||||| | Sbjct 34646 AGACCGATGGGACGGTGACGGAAGTTG---CTCTTGCGAGCTTCTGGCACGGGGTAGTGG 34702 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 ||| | ||||| | |||||| | ||| ||||| | || ||| | | ||| | Sbjct 34703 TTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGGGTGACCTGGTGGAGCTTC 34762 Query 244622 TGAAAGTCGTA---CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 | |||||| | ||||| | ||| || ||| | ||| Sbjct 34763 TCGAAGTCGAAACGCTCGTTCTCAATGTCGACGTATGTGGGC---------------AGG 34807 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 |||| || |||||||| ||||| ||||| || | ||||||| || ||||||| Sbjct 34808 GCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCG 34867 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 |||||||| || || |||||| |||| || || || ||| |||| |||| Sbjct 34868 GTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCA 34927 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 |||||||||||||| ||| | || ||||||||| || || |||||| | | | Sbjct 34928 GCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATAC 34987 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 ||||| | | ||| ||| ||| ||| |||||||||| |||||| || |||| Sbjct 34988 CAGAGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTAC 35047 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || |||||||||| | ||| |||| || | || ||||||||| |||||||| Sbjct 35048 AGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATC 35107 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 | | |||| | | || || | || ||||||||| || |||| ||| || | Sbjct 35108 AAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCG 35167 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 | ||| || || | | | ||| ||| || |||||| | || ||||| ||| Sbjct 35168 TAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAG 35227 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 ||||| || ||||||| ||||| ||||| | || | || || || ||||||||| Sbjct 35228 GAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTGTTG 35287 Query 245159 CCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTAT 245214 || |||||||| | | | |||||| ||| || | ||||| | || || | Sbjct 35288 CCGCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAG 35343 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||||||||| ||||||| || || |||| | | | ||| Sbjct 35344 ACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGC----GCGAATTCTG- 35398 Query 245274 TGGACAT---GCCTAGT-CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329 ||||| | ||| | | || ||||||| ||||||||| | ||||||| |||| | ||| Sbjct 35399 TGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTG 35458 Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 || || || || |||||||| ||||||| || || |||||||| | ||| || Sbjct 35459 TCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGA 35518 Query 245390 GGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAG 245449 | ||||| | | | | ||||||| || || || || || ||||| | |||| Sbjct 35519 GCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGAC 35578 Query 245450 AGGAACCCGTACGTCTGGA--GCAGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCG 245506 | | | ||| |||| | || || ||||||| ||||||||||| | | || | Sbjct 35579 ATGTAGTTGTAGGTCTCAATGGCGGA--CTCGATGTCCTCGCCGTGGATGCCGACGGCCA 35636 Query 245507 CACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGAGC------ 245560 || | ||||| | || || || |||| || ||| | || |||| | Sbjct 35637 CA-CGCATGATCATCTGTTGTGGTCTCTC---GGCAACCTTG---CCGTTGATCCTCAAA 35689 Query 245561 ATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGC 245620 | ||| || | ||| ||||||||||| |||||||| |||| ||||| || || Sbjct 35690 AGGTATGACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAA 35749 Query 245621 CTGACGGCTGCGTCGAGTCTC-TCGGCGTGCTTC-TGACTG 245659 || ||| || ||| ||| || ||||||||| |||||| Sbjct 35750 ACGATGGCGCTGTTGAG-CTCGTCCGCGTGCTTCATGACTG 35789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944257809765200