Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1789 132 1e-25 seq1700 113 1e-19 seq1447 105 2e-17 >seq1789 Length=118145 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| || || ||||| || ||||| | | Sbjct 19488 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 19547 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | ||| || || |||||||||| |||||||| |||||| Sbjct 19548 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGG---TCTGGG 19604 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | || || || Sbjct 19605 GGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCC 19664 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||||||||| || || |||||||||||||| |||||||| Sbjct 19665 ACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | || || | || | ||||| || || || || || || || Sbjct 19257 TGTCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCA 19316 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || ||||| || | || || || |||||||| || ||||||||| | Sbjct 19317 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGT 19376 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || || || |||| |||||||| || || | || || || Sbjct 19377 GGGATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCC 19436 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 19437 ACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 >seq1700 Length=96718 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 ||||| |||||||| | | |||| ||||| ||| | |||||| ||||| ||||| Sbjct 69374 GACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAG 69315 Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 ||||| || || ||| || || ||||||||| | |||| ||||| | | || Sbjct 69314 TTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCTACCAAC 69255 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 ||||||| ||| ||||| || || |||| ||| ||||| ||||||||||| |||||| Sbjct 69254 CCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGT 69195 Query 269311 GTCAGCGACTATCAA 269325 ||| | || || ||| Sbjct 69194 GTCGGTGATTACCAA 69180 >seq1447 Length=163572 Score = 105 bits (116), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||| | || || || || || | ||| ||||| ||||||||| Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 89102 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 | |||||||| ||||||||| || ||||||||||| || ||| || ||||| || Sbjct 89103 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTC 89161 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| ||| || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 89162 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 89221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550186749810