Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1789 96.9 3e-15 seq5725 82.4 8e-11 >seq1789 Length=118145 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||||||||| | | || || |||| ||||||||||||||||| | Sbjct 19296 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 19355 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||| || || || || || || || || ||||| || || ||| || Sbjct 19356 ATGAGGCGCTGTTGATCCGGTGGGATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTG 19415 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | |||||||| | || | ||||||||||| | || || ||| Sbjct 19416 TCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACG 19475 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 19476 AAGATTTGCAT 19486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || || ||||||| | || ||||||||||| || Sbjct 19746 GTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCC 19805 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| |||||||| || || || ||||| || || ||| Sbjct 19806 GCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTC 19865 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 ||| || | ||||| || || || || | || | |||||| || |||| Sbjct 19866 ACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTTTCCAGTCA 19920 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | |||||| || || || |||||||| || | || ||||| |||| Sbjct 19503 AGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 19562 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || | ||||| ||||| || ||||| || || || || Sbjct 19563 TCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 19622 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | ||||| || | || | ||| Sbjct 19623 TGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATCGTC 19682 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||| || ||||| || ||||| Sbjct 19683 TTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 >seq5725 Length=16029 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || ||| || |||| || |||||||||||| Sbjct 12435 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCG 12376 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||| ||||| || ||||| ||||| || ||| Sbjct 12375 GCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCT 12331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601736863800