Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1700 147 2e-30 seq1447 100 3e-16 seq1789 98.7 1e-15 seq5725 87.8 2e-12 >seq1700 Length=96718 Score = 147 bits (162), Expect = 2e-30 Identities = 499/761 (66%), Gaps = 21/761 (3%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| |||||||||| || ||| ||||| |||| |||||||| || | ||| || Sbjct 69932 AACGACGACGAGCGCTTCTTCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGC 69873 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCA 52204 ||||| ||| |||||||||||| | | ||||||| | || | | |||||| | Sbjct 69872 ATCGTCAACGAGAACCTCATCGAGCGCTT-CAGCGGAGAAGTGCAAATCCCCGAGGCCCG 69814 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| ||| || || Sbjct 69813 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCT 69754 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACGAGCGCGACACG---CTGCTGAATGCGTTCGA 52321 ||| || || | | | || |||| | ||| |||| || | || || |||| Sbjct 69753 CATCGA-CACAT-ACATCAGC-GAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGA 69697 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 || | || ||| | || || |||||| | ||||| || ||||||| | | | Sbjct 69696 CAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAA 69637 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | |||| | ||| || | | ||||| ||| | ||||| | || || ||||| Sbjct 69636 CTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGG 69577 Query 52442 CAGCTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 | |||| || | ||||| | | || | | || | ||||||||||| || ||| Sbjct 69576 -ATCTTTCGCATCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCT 69518 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA 52560 ||||||| | || || || ||||| || ||||||| |||||||| ||||| | | Sbjct 69517 CCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCT 69458 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG--AG-CATGTTCAAGGAGG 52617 | | | | | | | || | || || || | || ||| ||| |||| Sbjct 69457 ---CTCACCTCAACAACAA---GCCATCAAACCAAGTCGTTGAAGACATCATCACCGAGG 69404 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || | ||||| ||||||| | || | ||| || || | ||| || || |||| Sbjct 69403 CTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGA 69344 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 |||| || ||||||| | ||||||||||| || || || ||||| | || |||| Sbjct 69343 ACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCG 69284 Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 | || ||| ||| ||| ||||||| ||| || || || || ||| | ||||| || || Sbjct 69283 G-CAACCAGAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTC 69225 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||| ||||||||||| ||||| || || Sbjct 69224 GGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGATTA 69184 >seq1447 Length=163572 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| ||| || ||||||||||| || |||| ||| Sbjct 89041 CCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 89100 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | | |||||||||||||| || || || || || || ||| || || | | | Sbjct 89101 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGT 89160 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | |||||||| |||||||||||||| || | || || || || || || || || | Sbjct 89161 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 89220 Query 138605 AAATCTGCATGGCTT 138619 || | | |||| ||| Sbjct 89221 AACTGT-CATGACTT 89234 >seq1789 Length=118145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||||||| || |||| Sbjct 19521 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 19580 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||||||||| || || || || || ||||| ||| || || | Sbjct 19581 AAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACG 19640 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||| || ||||| ||||| || Sbjct 19641 TTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTG 19700 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19701 ACGAAGATCTGCAT 19714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||| | || ||| ||||| || || || || | Sbjct 19749 GACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCG 19808 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| ||||| ||||| || || || ||||| ||| || | || | Sbjct 19809 AAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTCACA 19868 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | ||| || | ||||| ||||| | || | || || ||||||| Sbjct 19869 TTG-TCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTTTCCAGTCA 19920 >seq5725 Length=16029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | | | |||||||| || |||||||||||| Sbjct 12466 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 12407 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| || |||||||||||||| || Sbjct 12406 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 12347 Query 138507 TATACCTTCTTTGTCGGT 138524 || ||||| ||||| || Sbjct 12346 AATGCCTTCCTTGTCTGT 12329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219628384400