Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1700 125 7e-24 seq1789 120 3e-22 seq1447 91.5 1e-13 >seq1700 Length=96718 Score = 125 bits (138), Expect = 7e-24 Identities = 356/543 (66%), Gaps = 23/543 (4%) Strand=Plus/Minus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| || ||| | || | ||||| || ||||| || | Sbjct 69713 CTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGG 69654 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || || | ||| ||| | ||| ||| | ||||| || ||| | | ||| Sbjct 69653 TGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATTGAG 69594 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTTACATGAAAACCAAAGGAGTTAT 47224 || |||||||||| || | |||| || |||| || | |||| | || | || Sbjct 69593 GGTATCTTCTTCTCCGG-ATCTTTCGCATCGATCTTCTGGTTGAAGAAGCGTGGTCTCAT 69535 Query 47225 GCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTT 47284 |||||||||||| || ||||||||| ||||| | ||||| ||| |||||||| |||| Sbjct 69534 GCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTT 69475 Query 47285 TGCCTG--------TCTCT-ACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335 |||||| ||||| || ||||| | | | |||||| | || Sbjct 69474 TGCCTGCCTGCTGTTCTCTCACCTCAACA--ACAAGCCATCAAA----CCAAGT------ 69427 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 ||| ||||| | |||| || |||| ||| ||| |||||| || | || || || Sbjct 69426 CGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCCT 69367 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 || | | | ||||||||||| || | ||| | | |||||||| || ||||| Sbjct 69366 CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGC 69307 Query 47456 CGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515 |||||| || ||| | || | | ||| ||| || | || || ||||| Sbjct 69306 CGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCTACCAACCCCTTCGA 69247 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 || ||| | ||||| || |||| |||||||||||||| ||||||||||| ||||| || Sbjct 69246 CTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGA 69187 Query 47576 ATA 47578 || Sbjct 69186 TTA 69184 >seq1789 Length=118145 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||| | ||| ||||| || || || ||||| || Sbjct 19488 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 19547 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || || ||| ||||||||||||| || || || || Sbjct 19548 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 19607 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| | ||| || Sbjct 19608 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTG-TCGATGGTGTCCGAAGACTCCAC 19666 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| ||||| || ||||| || || || |||||||| Sbjct 19667 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || ||||| ||||| |||| Sbjct 19716 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTG 19775 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||| | |||||||| || ||||| Sbjct 19776 AGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGA 19835 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | |||| ||| |||| ||| || Sbjct 19836 ATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 19895 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | || || || |||| Sbjct 19896 TCAAGGGTGATGGTCTTTCCAGTCA 19920 >seq1447 Length=163572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || || || ||| || || || ||||| ||| ||||| Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 89102 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| || || || || || |||||||| ||| ||| || ||||| |||| || Sbjct 89103 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTG-TC 89161 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || |||| ||| | || ||||| || || || || || || Sbjct 89162 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 89221 Query 127105 AATCTGCATGGCTT 127118 | | | |||| ||| Sbjct 89222 ACTGT-CATGACTT 89234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475459817774800