Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1700 165 1e-35 seq3840 104 4e-17 >seq1700 Length=96718 Score = 165 bits (182), Expect = 1e-35 Identities = 350/519 (67%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | ||| || |||||||| |||| ||||| Sbjct 69198 CTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 69257 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||||| | ||||| ||| || | | ||| || || || || Sbjct 69258 GGTAGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGGTCGGCGACGAACTC 69317 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| ||| ||| || || || ||| | ||||| || || | Sbjct 69318 GATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGT 69377 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT--CTGCGA-GACACGTTCGTA 159885 || ||||||| ||| || |||| || ||||| | || || | | ||| || || Sbjct 69378 GAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGTCTTCAACGAC---TTGGTT 69434 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||||| || ||| ||||| ||||| ||||||||| ||||| || Sbjct 69435 TGATGGCTTGTTGT---TGAGGTGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATGCC 69491 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||| ||||||| |||||| || Sbjct 69492 CTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTCTT 69551 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 | ||| || || | || |||| ||| || ||||| ||||| | ||| ||||| || Sbjct 69552 CAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCTCAATGGCGGCAAAGGC 69611 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | ||| | |||| | || ||| |||| | |||||| ||||| ||||| Sbjct 69612 GATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGATCCACCGCAGCGCCCAGTCAGC 69671 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 |||||| |||||| || ||| |||| |||||| || Sbjct 69672 CTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAA 69710 >seq3840 Length=90666 Score = 104 bits (114), Expect = 4e-17 Identities = 447/699 (64%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGG-CGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || ||||||||||||| || ||| | | | || | | || |||||||||| Sbjct 33892 CTGGTCGACGGTGAACTGAATGGGCGCAGACGCC-GCCATGGTGCGAAGGTAGTACATGC 33950 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| ||||| || ||| ||| | ||||||| | | ||||| || | ||| Sbjct 33951 CAGTCTTCAGGCCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTGG 34010 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || |||||| |||||||| ||| || |||||||||| | || || |||| Sbjct 34011 GCTCCTTCATGTGGATGTTCAGGCTCTGAGACTGATCGATGAAAGCACCACGGTCAGCGG 34070 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 ||| | | ||| ||| |||||||| || |||||| ||| | || || Sbjct 34071 ACATCTGAACGATGTGGCGCTGGCTGATCTCCCAGACGGTCTTGTACAGAGCCTTGAGGT 34130 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || | | || | | ||| || || || ||||| || | | || || Sbjct 34131 CATCGGGGATGT-TTGGAATGCGCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTC 34189 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||| | ||| | || || ||| || || ||||||| | | Sbjct 34190 ATGTTGTCTGACCAGAGGCCACGCTCGACCAAGTCCTTCAGCAACCACGGGTTGACAACC 34249 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || | ||||| | |||| | | | |||| ||||| |||| ||||| | Sbjct 34250 TGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGCTCGAAACAC 34309 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 |||||| ||| | ||||| | |||| || || ||||||||||| | ||| || ||| Sbjct 34310 TCGTTGAAGCCCATGATCTGCGAGGTGGACGCAGTTGGCATGGGAGCGACGAGGAGCGAG 34369 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTG 204376 ||||| ||||| | | || | || ||| || | || |||||| | || | Sbjct 34370 TTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCCAGAGATCAGTA 34429 Query 204377 GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTAC 204436 || |||| |||||||||||| | || | ||| | ||| ||| |||| ||| Sbjct 34430 GGAGTCACACCCCACATGTCGTATTGGAGCTCGCCCTTGGAGACGGGGGACCCCTCGTAT 34489 Query 204437 GTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTAC 204496 ||| || || | || | || || | ||| ||||||| | || | ||| Sbjct 34490 GTCTCGTATGGTCCAAGCTTGGCAGCGAGATCGCATGAGGCGGTGAGAGCAGCGTGGTAG 34549 Query 204497 ATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTC 204534 |||||||| |||||||| | | || | |||||| ||||| Sbjct 34550 ATGGTCTCGAAGATCTGGATG-TTGAGCTGGCGAGCCTC 34587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795086667561200