Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1700 116 4e-21 seq3840 104 3e-17 >seq1700 Length=96718 Score = 116 bits (128), Expect = 4e-21 Identities = 280/421 (67%), Gaps = 16/421 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 69184 TAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 69243 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | ||||| | ||| || || | | ||||| Sbjct 69244 AAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTG-----CCGAGTGCCAGGAGGA 69298 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 |||| || | || |||| ||||| | | |||| || | |||||| |||| ||| Sbjct 69299 GACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCG 69358 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||||||||| ||||| || |||| | | ||| || | || ||||| | | |||| Sbjct 69359 CACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGT 69418 Query 117221 CGTGGATAGTTTCGGTAG-TGGGTC--TATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | | | || | | | ||| | | || | || ||| ||| ||||| Sbjct 69419 CTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGA---GAACAGCAGGCAGGCAA 69475 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| | ||||| || ||||| || || || || |||||| ||||| |||| Sbjct 69476 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 69535 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||||||||| | || | ||| || ||||||||||||||||||| Sbjct 69536 TGAGACCACGCTTCTTCAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCT 69595 Query 117398 C 117398 | Sbjct 69596 C 69596 >seq3840 Length=90666 Score = 104 bits (114), Expect = 3e-17 Identities = 551/867 (64%), Gaps = 21/867 (2%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||||| ||||| | ||||| || || ||| || | | |||||||| | | Sbjct 34802 GGCAGGGCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATA 34861 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||||| || || || ||||| ||||| ||||| ||||| || Sbjct 34862 ATCTCGGTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTG 34921 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||| ||||| || || || ||||| || || | || ||| || Sbjct 34922 TTGGCAGCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATG 34981 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACT 106694 || | ||| | | || | || | || | | | ||| | ||||| |||||| Sbjct 34982 GCATACCAGAGCTTCTG-AGCGCGGACGGTCTC-ACGACCCTTGCCCTCACGCTCGTATC 35039 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 ||| || | || ||||| | || | || | ||||| || || || | Sbjct 35040 GCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAG 35099 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | | || ||| | | |||||| ||||||||||| || ||||| | || Sbjct 35100 GGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCC 35159 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||| | || ||||| | | ||| |||| || | || ||||| || | | Sbjct 35160 ACAGACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGAT 35219 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATC 106928 | | ||| | || ||| |||||||||||||| | || | || | || || Sbjct 35220 CCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTC 35279 Query 106929 CCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 ||| | | ||||| || | || ||||| || ||| |||||| || || ||||| Sbjct 35280 GCTTGTTGCCGCCC----TGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATG 35335 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 || | | ||| | ||| || || || || | || | | | || | | Sbjct 35336 GGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATT 35395 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAA 107105 |||| || | |||||| || || || ||| ||||| | ||||| || ||| Sbjct 35396 CTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCA-GGTCTTTAA 35454 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 || | ||||| || | || ||| || || || |||| |||||||| | || Sbjct 35455 -TGTGTCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCA 35513 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 107224 || | | ||||| ||||| |||| || || || | || || |||| ||| | Sbjct 35514 GTTGAGCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAA-GTACTTG 35572 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||||| | || ||| ||||| | | | || || ||||| || ||||||||||||| | Sbjct 35573 TTCGACATGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACG 35632 Query 107285 GCCACACGCATAAACATGTATTGGGGT 107311 ||||||||||| | ||| | ||| ||| Sbjct 35633 GCCACACGCATGATCATCTGTTGTGGT 35659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589929951029800