Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1789 143 6e-29 seq5725 100 6e-16 >seq1789 Length=118145 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || ||||| ||||| ||| || || | |||||| || ||||| Sbjct 19739 GTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTG 19798 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||||||||||||||| || |||||||| || || Sbjct 19799 CTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTT 19858 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || ||||| ||||| || || |||||||| | |||||||| || Sbjct 19859 GCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTTTCCAGT 19918 Query 195117 CA 195118 || Sbjct 19919 CA 19920 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| || | || || | || || ||| Sbjct 19506 ACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 19565 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| | ||| ||||||||||| |||||||| || ||||| || Sbjct 19566 AGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 19625 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| ||||| || | ||| | |||||| Sbjct 19626 ATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATCGTCTTG 19685 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 19686 CCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || ||||| |||||||| | ||| || | || || || ||||| Sbjct 19283 GTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCCTCAAGCTG 19342 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || || || || || || ||||||||||| || Sbjct 19343 CTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATACCCTCCTTGTCTTGAATCTT 19402 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || ||||| || |||||||| || || | ||||| || || Sbjct 19403 CGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTCTTGCCGGT 19462 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 19463 GAGTGTCTTGACGAAGATTTGCAT 19486 >seq5725 Length=16029 Score = 100 bits (110), Expect = 6e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || ||||| || || || ||||| |||| || |||| || || || Sbjct 12448 AACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTC 12389 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||||||| || |||||||| || || |||||||| || ||||||||||| |||||| Sbjct 12388 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCT 12331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383585968465