Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1700 214 3e-50 seq3840 192 1e-43 >seq1700 Length=96718 Score = 214 bits (236), Expect = 3e-50 Identities = 569/864 (66%), Gaps = 36/864 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | ||| |||||||||||| ||||| ||||| Sbjct 70025 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 69966 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || ||| | | ||||||| || | ||| || Sbjct 69965 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGACGACGAGC-GCTTCTTCATCTC 69907 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| ||||| || || || ||||| || || |||||||| || |||| | Sbjct 69906 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 69847 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | |||||||| | |||||| || |||||||| |||||||| || Sbjct 69846 CTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 69787 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || ||||| ||| || Sbjct 69786 GGAGAACATCCACTCCGAGACATACTCC---CTCCTCATCGACACATACAT--CAG-CGA 69733 Query 25770 CGCCGAGAGA-GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || || | | || || || |||||||| |||| || ||||| | ||| Sbjct 69732 GCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAA 69673 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| || ||||||| | | ||| | | || |||| | || || | Sbjct 69672 GGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCAT 69613 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || | ||||| ||||| ||| ||| || || || | ||||||||| | Sbjct 69612 CGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGGTT 69553 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || || ||||||||| || ||| ||||||||||||||| | | ||||| Sbjct 69552 GAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGA 69493 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||| | |||| || |||||||||||||| | | | ||| | | |||| || || Sbjct 69492 GGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCACCTCAACAACAAGCCATC 69436 Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | | ||| | ||||||| |||||||| | |||||| ||||||| | Sbjct 69435 AAACCAAGTCGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCAC 69376 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | || |||||| || |||||| |||||||||| || Sbjct 69375 AGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 69316 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTAC 26240 || || ||||||| ||| || |||| ||||| ||||| | ||||| || Sbjct 69315 GTTCGTCGCCGACCGTCT------CCTCCTGGCACTCGGCAACCAGAAGCACTACA--AC 69264 Query 26241 GC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 || | ||||| |||||||| ||||| ||||| || | | ||| |||||||||||||| Sbjct 69263 GCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTC 69204 Query 26299 GAAAAGAGGGTCGGCGACTATCAA 26322 || ||| | ||||| || || ||| Sbjct 69203 GAGAAGCGTGTCGGTGATTACCAA 69180 >seq3840 Length=90666 Score = 192 bits (212), Expect = 1e-43 Identities = 939/1467 (64%), Gaps = 63/1467 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || |||||||||||||||||||| |||||| ||||||| || | ||||| || Sbjct 34532 GTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CTGGCGAGCCTCAGG 34590 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| || ||||| ||||| | ||||| | || || || || | || || | || Sbjct 34591 AGAGTCAAAAGGCATGCGCAGAGCCAAGAAAG-CATCAGCAAGACCGTTGACACCAAGAC 34649 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||||| | ||| | |||| | |||||||||||||| || |||||| | Sbjct 34650 CGATGGGACGGTGACGGAAGTTGCTCTTGCGAGCTTCTGGCACGGGGTAGTGGTTGACCT 34709 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||| | |||| || |||| | || ||| | || ||| | | Sbjct 34710 CGATGATCTTGTTCAAGTTCT---TGGTGACGGT------CTGGGTGACCTGGTGGAGCT 34760 Query 221655 TGAACACCAACTCGC--CGC-CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | || ||| ||| ||| | | | || || | | | ||||| | Sbjct 34761 T---CTCGAAGTCGAAACGCTCGTTCTCAATG---TCGACGTATGTGGGCAGGGCGAGAG 34814 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| |||||||| |||||||| || |||| || ||||| || |||| Sbjct 34815 ATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCGGTGCAGA 34874 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 | ||| || |||||| |||| || || || || ||||| ||||||||||||| Sbjct 34875 GATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCAGCGTCCT 34934 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 ||||||| || | || || ||||| |||||| | || || | |||||| | Sbjct 34935 TGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCT 34994 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAG 221947 |||| |||| || ||| || ||| ||| | | || || | || | || || Sbjct 34995 -TCTGAGCGCGGACGGTC-TCACGACCCTTGCCCTCACGCTCGTATCG--CTCG---TAC 35047 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| || |||| | ||||| | || |||| || || ||| | || |||||| Sbjct 35048 AGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATC 35107 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 | | ||||| | || | | || | || ||||||||| || |||| |||||| | Sbjct 35108 AAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCG 35167 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | | || ||||||| |||| ||| || | |||||||| || Sbjct 35168 TAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAG 35227 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || | || |||||||| ||||| | || | ||| | ||| || |||||||||||| Sbjct 35228 GAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTGTTG 35287 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 || ||||| || | | | | || | ||| || | || || | ||||| || Sbjct 35288 CCGCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAG 35343 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC 222303 ||||||||| ||||||||||| | ||||| || ||| || | | | || | Sbjct 35344 ACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGC---GAATTCT-GT 35399 Query 222304 AGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 ||| | || || || ||||||| || ||||||||||||||| |||| | |||| Sbjct 35400 GGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGT 35459 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| || || || ||| || || | || | || || || || | || |||| Sbjct 35460 CGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAG 35519 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 |||| | | ||| | |||||||| || || ||||| ||||| | |||| Sbjct 35520 CGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGACA 35579 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATC 222539 | | ||| ||||| | | | |||||| || ||||| || | ||| | Sbjct 35580 TGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACGGCCACAC 35639 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACG 222596 |||| ||| | || || |||| | | | ||||| | || | ||||| | Sbjct 35640 GCATGATCATCTGTTGTGGTCTCT---CGGCAACCTTGCCGTTGATCCTCAAAAGGTATG 35696 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 | | ||||| |||||||| |||||||| | | || ||||| | | ||| ||| | || Sbjct 35697 ACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAAACGATGG 35756 Query 222657 CGGCGTCCAGCTCCGACTTGTGCTTTACG-CTCAACTCGAAAAAG-CGC-TCAGACACGA 222713 || || ||||| | |||||| | | || ||| | | | | | || || | | Sbjct 35757 CGCTGTTGAGCTCGTCCGCGTGCTTCATGACT---GTCGCATATGTCTCGTCTGAGATCA 35813 Query 222714 GGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAG 222773 ||| ||| || ||||| | ||||| | || |||||| || | | | | | || | | Sbjct 35814 TGGGCGCGGCCTTGTTGGTTTTTGGGTTGATGTAGTGGTATAGATCCGAGACGACAGCGG 35873 Query 222774 AGAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATA 222832 ||||| | || | ||||||||||| || || || |||||||| || | || | || Sbjct 35874 AGAACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATACGTGCGGCGAGAATG 35932 Query 222833 CCATAGTCAGGGTGCACGGTGGTCATG 222859 | ||||| ||||| | ||||||| Sbjct 35933 GCGTAGTCGGGGTGGGTGACGGTCATG 35959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928764745188800